RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 ORC3Q9UBD5 711 aaPredicted RBP12.91□□□□□ -0.34
CLN3-226ENST00000567160 NR2E1Q9Y466 385 aa12.91□□□□□ -0.34
CLN3-226ENST00000567160 EPG5Q9HCE0 2579 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 MED19A0JLT2 244 aaPredicted RBP12.9□□□□□ -0.34
CLN3-226ENST00000567160 PRPF3O43395 683 aaKnown RBP12.9□□□□□ -0.34
CLN3-226ENST00000567160 FOSBP53539 338 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 QRICH1Q2TAL8 776 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 ASTLQ6HA08 431 aaPredicted RBP12.9□□□□□ -0.34
CLN3-226ENST00000567160 KLHL23Q8NBE8 558 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 MICAL1Q8TDZ2 1067 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 RNF26Q9BY78 433 aaPredicted RBP12.9□□□□□ -0.34
CLN3-226ENST00000567160 OSBPL7Q9BZF2 842 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 MFSD1Q9H3U5 465 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 MLXIPQ9HAP2 919 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 PXMP2Q9NR77 195 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 COL20A1Q9P218 1284 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 DAXXQ9UER7 740 aaPredicted RBP12.9□□□□□ -0.34
CLN3-226ENST00000567160 SEC63Q9UGP8 760 aaKnown RBP12.9□□□□□ -0.34
CLN3-226ENST00000567160 SORCS3Q9UPU3 1222 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 SMC3Q9UQE7 1217 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.9□□□□□ -0.34
CLN3-226ENST00000567160 MRPL42Q9Y6G3 142 aaKnown RBP12.9□□□□□ -0.34
CLN3-226ENST00000567160 MYO10Q9HD67 2058 aa12.9□□□□□ -0.34
CLN3-226ENST00000567160 PNMA6FA0A0J9YX94 578 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 NOP56O00567 594 aaKnown RBP12.89□□□□□ -0.35
CLN3-226ENST00000567160 ENPP3O14638 875 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 SORBS3O60504 671 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 LGALS2P05162 132 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 TGFB3P10600 412 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 GHRP10912 638 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 GJB2P29033 226 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 UBE3AQ05086 875 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 RSPH3Q86UC2 560 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 SMARCC2Q8TAQ2 1214 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 TBC1D5Q92609 795 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 GPKOWQ92917 476 aaPredicted RBP eCLIP12.89□□□□□ -0.35
CLN3-226ENST00000567160 MTMR8Q96EF0 704 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 AIFM3Q96NN9 605 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 ZNF215Q9UL58 517 aaPredicted RBP12.89□□□□□ -0.35
CLN3-226ENST00000567160 MRPL11Q9Y3B7 192 aaKnown RBP12.89□□□□□ -0.35
CLN3-226ENST00000567160 EP300Q09472 2414 aaPredicted RBP12.89□□□□□ -0.35
CLN3-226ENST00000567160 ZNF292O60281 2723 aa12.89□□□□□ -0.35
CLN3-226ENST00000567160 STK36Q9NRP7 1315 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 TPRP12270 2363 aaKnown RBP12.88□□□□□ -0.35
CLN3-226ENST00000567160 MYH15Q9Y2K3 1946 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 ZBTB5O15062 677 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 PPP1R11O60927 126 aaPredicted RBP12.88□□□□□ -0.35
CLN3-226ENST00000567160 DEXIO95424 95 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 MYCLP12524 364 aaPredicted RBP12.88□□□□□ -0.35
CLN3-226ENST00000567160 SCG2P13521 617 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 FDPSP14324 419 aaKnown RBP12.88□□□□□ -0.35
CLN3-226ENST00000567160 CLCN5P51795 746 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 HMGN5P82970 282 aaKnown RBP12.88□□□□□ -0.35
CLN3-226ENST00000567160 PUM1Q14671 1186 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLN3-226ENST00000567160 PFKFB3Q16875 520 aaPredicted RBP12.88□□□□□ -0.35
CLN3-226ENST00000567160 PDE12Q6L8Q7 609 aaKnown RBP12.88□□□□□ -0.35
CLN3-226ENST00000567160 HEATR3Q7Z4Q2 680 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 FAM184AQ8NB25 1140 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 ATP8B4Q8TF62 1192 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 SETD4Q9NVD3 440 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 PLXNA4Q9HCM2 1894 aa12.88□□□□□ -0.35
CLN3-226ENST00000567160 KRT37O76014 449 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 CFBP00751 764 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 CHRNA1P02708 482 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 STAG3L1P0CL83 205 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 UBA1P22314 1058 aaKnown RBP12.87□□□□□ -0.35
CLN3-226ENST00000567160 ARHGAP4P98171 946 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 DUSP6Q16828 381 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 WWC2Q6AWC2 1192 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 TAF2Q6P1X5 1199 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 NPAS4Q8IUM7 802 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 KCNG4Q8TDN1 519 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 WASF1Q92558 559 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 RMDN1Q96DB5 314 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 INTS4Q96HW7 963 aaKnown RBP12.87□□□□□ -0.35
CLN3-226ENST00000567160 AMNQ9BXJ7 453 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 SEMA4AQ9H3S1 761 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 EHMT1Q9H9B1 1298 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 AAASQ9NRG9 546 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 VPS54Q9P1Q0 977 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 PCDHB12Q9Y5F1 795 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 PCDHGC5Q9Y5F6 944 aa12.87□□□□□ -0.35
CLN3-226ENST00000567160 NCOR2Q9Y618 2525 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 PER2O15055 1255 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 RGS20O76081 388 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 BRD1O95696 1058 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 HOXB8P17481 243 aaPredicted RBP12.86□□□□□ -0.35
CLN3-226ENST00000567160 SP100P23497 879 aaPredicted RBP12.86□□□□□ -0.35
CLN3-226ENST00000567160 LPIN1Q14693 890 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 PAN2Q504Q3 1202 aaKnown RBP12.86□□□□□ -0.35
CLN3-226ENST00000567160 TMEM184AQ6ZMB5 413 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 TSHZ1Q6ZSZ6 1077 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 LMBR1Q8WVP7 490 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 PDCD2LQ9BRP1 358 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 FTHL17Q9BXU8 183 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 GJB4Q9NTQ9 266 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 MAP3K20Q9NYL2 800 aaKnown RBP12.86□□□□□ -0.35
CLN3-226ENST00000567160 PCDHA1Q9Y5I3 950 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 DMXL1Q9Y485 3027 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 WDR87Q6ZQQ6 2873 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms