RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 NNTQ13423 1086 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 SF3B2Q13435 895 aaKnown RBP6.85□□□□□ -1.31
CLN3-223ENST00000566472 TNFAIP1Q13829 316 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 HSP90B2PQ58FF3 399 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 KIAA1755Q5JYT7 1200 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 CCDC181Q5TID7 509 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 CCDC174Q6PII3 467 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 LDHDQ86WU2 507 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 C12orf56Q8IXR9 622 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 FAM186BQ8IYM0 893 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 SPICE1Q8N0Z3 855 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 SLC17A8Q8NDX2 589 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 SLC35C1Q96A29 364 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 BORCS6Q96GS4 357 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 CALR3Q96L12 384 aaKnown RBP6.85□□□□□ -1.31
CLN3-223ENST00000566472 SPAG5Q96R06 1193 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 ZNF577Q9BSK1 485 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 TLR10Q9BXR5 811 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 KIAA1683Q9H0B3 1180 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 UNC45AQ9H3U1 944 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 ST7Q9NRC1 585 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 DMAC2Q9NW81 257 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.85□□□□□ -1.31
CLN3-223ENST00000566472 PGAP2Q9UHJ9 254 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 DBR1Q9UK59 544 aaKnown RBP6.85□□□□□ -1.31
CLN3-223ENST00000566472 TFR2Q9UP52 801 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 PCDHB13Q9Y5F0 798 aa6.85□□□□□ -1.31
CLN3-223ENST00000566472 ARHGEF35A5YM69 484 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 RSPH10B2B2RC85 870 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 PDE2AO00408 941 aaPredicted RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 MAPK13O15264 365 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 P4HA2O15460 535 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 SRGAP2O75044 1071 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 PPP1R37O75864 691 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 RAD17O75943 681 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 AKAP3O75969 853 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 TFRCP02786 760 aaKnown RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 P4HBP07237 508 aaKnown RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 RSPH10BP0C881 870 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 RPS12P25398 132 aaKnown RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 STAT1P42224 750 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 NPEPPSP55786 919 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 MCCD1P59942 119 aaPredicted RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 CYP4A11Q02928 519 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 C2orf54Q08AI8 447 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 CTTNQ14247 550 aaKnown RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 CFAP221Q4G0U5 840 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 MEI1Q5TIA1 1274 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 PCNX4Q63HM2 1172 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 XRRA1Q6P2D8 792 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 EMBQ6PCB8 327 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 CCNI2Q6ZMN8 369 aaPredicted RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 ZNF720Q7Z2F6 126 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 IRF2BP2Q7Z5L9 587 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 FAM178BQ8IXR5 827 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 MYCT1Q8N699 235 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 FAM133AQ8N9E0 248 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 EIF1ADQ8N9N8 165 aaKnown RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 SPATA4Q8NEY3 305 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 RDM1Q8NG50 284 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 CYP2W1Q8TAV3 490 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 AENQ8WTP8 325 aaKnown RBP6.84□□□□□ -1.31
CLN3-223ENST00000566472 COG1Q8WTW3 980 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.84□□□□□ -1.31
CLN3-223ENST00000566472 TBC1D5Q92609 795 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 HVCN1Q96D96 273 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 PBKQ96KB5 322 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 CAPZA3Q96KX2 299 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 FIZ1Q96SL8 496 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 IWS1Q96ST2 819 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 STRA6Q9BX79 667 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 ST6GALNAC4Q9H4F1 302 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 TMEM206Q9H813 350 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 VEZTQ9HBM0 779 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 SIX2Q9NPC8 291 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 RGL1Q9NZL6 768 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 CCPG1Q9ULG6 757 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 UBIAD1Q9Y5Z9 338 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 DUSP10Q9Y6W6 482 aa6.84□□□□□ -1.31
CLN3-223ENST00000566472 COL4A5P29400 1685 aa6.84□□□□□ -1.32
CLN3-223ENST00000566472 NCANO14594 1321 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 ZNF536O15090 1300 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 RBBP6Q7Z6E9 1792 aaKnown RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 A0A087X0T9 212 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 A0A0U1RQG5 324 aaPredicted RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 H3BQF6 201 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 IPO5O00410 1097 aaKnown RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 ZNF185O15231 689 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 PMM2O15305 246 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 POLR3GO15318 223 aaPredicted RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 PALMO75781 387 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 FAM228BP0C875 321 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 SLC9A1P19634 815 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 LMNB1P20700 586 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 KLRC1P26715 233 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 FMO5P49326 533 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 JAK3P52333 1124 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 EPHB4P54760 987 aa6.83□□□□□ -1.32
CLN3-223ENST00000566472 ZNF280AP59817 542 aaPredicted RBP6.83□□□□□ -1.32
CLN3-223ENST00000566472 TNNC1P63316 161 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms