RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 HOXD11P31277 338 aaPredicted RBP19.18■□□□□ 0.66
CLN3-211ENST00000564091 ADAM15Q13444 863 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 SMAD2Q15796 467 aaKnown RBP19.18■□□□□ 0.66
CLN3-211ENST00000564091 FAM160B1Q5W0V3 765 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 NIPA1Q7RTP0 329 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 TRMT1LQ7Z2T5 733 aaKnown RBP19.18■□□□□ 0.66
CLN3-211ENST00000564091 POF1BQ8WVV4 589 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 TMEM40Q8WWA1 233 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 PPP1R16BQ96T49 567 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 ERVK-5Q9HDB9 667 aa19.18■□□□□ 0.66
CLN3-211ENST00000564091 IGLV3-22A0A075B6J6 115 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 ZBTB42B2RXF5 422 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 RPS6KA5O75582 802 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 SARSP49591 514 aaKnown RBP19.17■□□□□ 0.66
CLN3-211ENST00000564091 PFKFB3Q16875 520 aaPredicted RBP19.17■□□□□ 0.66
CLN3-211ENST00000564091 CSPP1Q1MSJ5 1256 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 NAALADL2Q58DX5 795 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 MIS18BP1Q6P0N0 1132 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 CD207Q9UJ71 328 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 ST3GAL5Q9UNP4 418 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 PCDHB7Q9Y5E2 793 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 PCDHGC5Q9Y5F6 944 aa19.17■□□□□ 0.66
CLN3-211ENST00000564091 C5orf42Q9H799 3197 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 IPO5O00410 1097 aaKnown RBP19.16■□□□□ 0.66
CLN3-211ENST00000564091 CYP3A4P08684 503 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 NDUFV1P49821 464 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 METAP2P50579 478 aaKnown RBP eCLIP19.16■□□□□ 0.66
CLN3-211ENST00000564091 FGD1P98174 961 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 APOBRQ0VD83 1088 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 SMAD4Q13485 552 aaKnown RBP19.16■□□□□ 0.66
CLN3-211ENST00000564091 KRT32Q14532 448 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 ZNF484Q5JVG2 852 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 FAM102BQ5T8I3 360 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 RBM23Q86U06 439 aaKnown RBP19.16■□□□□ 0.66
CLN3-211ENST00000564091 CRYGNQ8WXF5 182 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 ADAM2Q99965 735 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 ZNF577Q9BSK1 485 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 MUC6Q6W4X9 2439 aa19.16■□□□□ 0.66
CLN3-211ENST00000564091 DENND3A2RUS2 1198 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 NRIP1P48552 1158 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 RCAN1P53805 252 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 KIZQ2M2Z5 673 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 SPOUT1Q5T280 376 aaKnown RBP19.15■□□□□ 0.66
CLN3-211ENST00000564091 CKAP2LQ8IYA6 745 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 PPP2R3CQ969Q6 453 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 RGS18Q9NS28 235 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 CLEC1BQ9P126 229 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 TTC3P53804 2025 aa19.15■□□□□ 0.66
CLN3-211ENST00000564091 PIEZO1Q92508 2521 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 TBKBP1A7MCY6 615 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 CDC45O75419 566 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 C22orf31O95567 290 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 VTNP04004 478 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 HMGB1P09429 215 aaKnown RBP19.14■□□□□ 0.65
CLN3-211ENST00000564091 PKN1Q16512 942 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 Q6ZUG5 572 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 METTL13Q8N6R0 699 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 EFHBQ8N7U6 833 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 RASGRP4Q8TDF6 673 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 MSLNLQ96KJ4 702 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 OSMRQ99650 979 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 UPF3BQ9BZI7 483 aaKnown RBP19.14■□□□□ 0.65
CLN3-211ENST00000564091 ZMYND12Q9H0C1 365 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 C6orf50Q9HD87 102 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 TBC1D22BQ9NU19 505 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 HCSTQ9UBK5 93 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 MUTYHQ9UIF7 546 aa19.14■□□□□ 0.65
CLN3-211ENST00000564091 MAFBQ9Y5Q3 323 aaPredicted RBP19.14■□□□□ 0.65
CLN3-211ENST00000564091 CCDC196A0A1B0GTZ2 297 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 C9IYK1 514 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 GPR182O15218 404 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 CRYBB1P53674 252 aaPredicted RBP19.13■□□□□ 0.65
CLN3-211ENST00000564091 PRR16Q569H4 304 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 SLC24A5Q71RS6 500 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 FAM228AQ86W67 206 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 MICAL1Q8TDZ2 1067 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 BBXQ8WY36 941 aaPredicted RBP19.13■□□□□ 0.65
CLN3-211ENST00000564091 BRF1Q92994 677 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 POP1Q99575 1024 aaKnown RBP19.13■□□□□ 0.65
CLN3-211ENST00000564091 C1orf112Q9NSG2 853 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 TYW1Q9NV66 732 aaKnown RBP19.13■□□□□ 0.65
CLN3-211ENST00000564091 GABBR1Q9UBS5 961 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 BARX2Q9UMQ3 279 aaPredicted RBP19.13■□□□□ 0.65
CLN3-211ENST00000564091 PCDHB12Q9Y5F1 795 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 COL1A2P08123 1366 aa19.13■□□□□ 0.65
CLN3-211ENST00000564091 ESYT2A0FGR8 921 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 PER2O15055 1255 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 GPR32O75388 356 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 EYA4O95677 639 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 FGFR1P11362 822 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 ZNF746Q6NUN9 644 aaPredicted RBP19.12■□□□□ 0.65
CLN3-211ENST00000564091 CENPQQ7L2Z9 268 aaPredicted RBP19.12■□□□□ 0.65
CLN3-211ENST00000564091 RNF135Q8IUD6 432 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 REXO1Q8N1G1 1221 aaKnown RBP19.12■□□□□ 0.65
CLN3-211ENST00000564091 PHKBQ93100 1093 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 JAKMIP1Q96N16 626 aaKnown RBP19.12■□□□□ 0.65
CLN3-211ENST00000564091 TLE6Q9H808 572 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 PCDHA10Q9Y5I2 948 aa19.12■□□□□ 0.65
CLN3-211ENST00000564091 PRPF3O43395 683 aaKnown RBP19.11■□□□□ 0.65
CLN3-211ENST00000564091 GLP2RO95838 553 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms