RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 CT47A1Q5JQC4 288 aaPredicted RBP15.07■□□□□ 0
VPS39-206ENST00000562662 OTUD6AQ7L8S5 288 aa15.07■□□□□ 0
VPS39-206ENST00000562662 PLPPR4Q7Z2D5 763 aa15.07■□□□□ 0
VPS39-206ENST00000562662 LUZP1Q86V48 1076 aa15.07■□□□□ 0
VPS39-206ENST00000562662 TRMT44Q8IYL2 757 aaKnown RBP15.07■□□□□ 0
VPS39-206ENST00000562662 KIAA0895Q8NCT3 520 aa15.07■□□□□ 0
VPS39-206ENST00000562662 OR6J1Q8NGC5 347 aa15.07■□□□□ 0
VPS39-206ENST00000562662 AFG1LQ8WV93 481 aa15.07■□□□□ 0
VPS39-206ENST00000562662 HPS3Q969F9 1004 aa15.07■□□□□ 0
VPS39-206ENST00000562662 ERO1AQ96HE7 468 aa15.07■□□□□ 0
VPS39-206ENST00000562662 SH2D3AQ9BRG2 576 aa15.07■□□□□ 0
VPS39-206ENST00000562662 GTPBP4Q9BZE4 634 aaKnown RBP15.07■□□□□ 0
VPS39-206ENST00000562662 SEPT9Q9UHD8 586 aaPredicted RBP15.07■□□□□ 0
VPS39-206ENST00000562662 PCDHA2Q9Y5H9 948 aa15.07■□□□□ 0
VPS39-206ENST00000562662 EVPLQ92817 2033 aa15.06■□□□□ 0
VPS39-206ENST00000562662 USO1O60763 962 aaKnown RBP15.06■□□□□ 0
VPS39-206ENST00000562662 GNRH1P01148 92 aa15.06■□□□□ 0
VPS39-206ENST00000562662 MMP3P08254 477 aa15.06■□□□□ 0
VPS39-206ENST00000562662 HOXD10P28358 340 aa15.06■□□□□ 0
VPS39-206ENST00000562662 PRCPP42785 496 aa15.06■□□□□ 0
VPS39-206ENST00000562662 ZNF131P52739 623 aa15.06■□□□□ 0
VPS39-206ENST00000562662 NCAPHQ15003 741 aa15.06■□□□□ 0
VPS39-206ENST00000562662 UVSSAQ2YD98 709 aa15.06■□□□□ 0
VPS39-206ENST00000562662 FAM26FQ5R3K3 315 aa15.06■□□□□ 0
VPS39-206ENST00000562662 MFSD14CQ5VZR4 134 aa15.06■□□□□ 0
VPS39-206ENST00000562662 TRMT1LQ7Z2T5 733 aaKnown RBP15.06■□□□□ 0
VPS39-206ENST00000562662 TRIM50Q86XT4 487 aa15.06■□□□□ 0
VPS39-206ENST00000562662 DAW1Q8N136 415 aa15.06■□□□□ 0
VPS39-206ENST00000562662 ADSSL1Q8N142 457 aa15.06■□□□□ 0
VPS39-206ENST00000562662 AOPEPQ8N6M6 819 aa15.06■□□□□ 0
VPS39-206ENST00000562662 ZNF296Q8WUU4 475 aaPredicted RBP15.06■□□□□ 0
VPS39-206ENST00000562662 CEP170P1Q96L14 293 aa15.06■□□□□ 0
VPS39-206ENST00000562662 CCDC43Q96MW1 224 aaKnown RBP15.06■□□□□ 0
VPS39-206ENST00000562662 MED15Q96RN5 788 aa15.06■□□□□ 0
VPS39-206ENST00000562662 CEP89Q96ST8 783 aa15.06■□□□□ 0
VPS39-206ENST00000562662 NIFKQ9BYG3 293 aaKnown RBP15.06■□□□□ 0
VPS39-206ENST00000562662 AZI2Q9H6S1 392 aa15.06■□□□□ 0
VPS39-206ENST00000562662 SLC39A2Q9NP94 309 aa15.06■□□□□ 0
VPS39-206ENST00000562662 CYP26B1Q9NR63 512 aa15.06■□□□□ 0
VPS39-206ENST00000562662 FAM184BQ9ULE4 1060 aa15.06■□□□□ 0
VPS39-206ENST00000562662 ODF2LQ9ULJ1 636 aa15.06■□□□□ 0
VPS39-206ENST00000562662 FRMPD3Q5JV73 1810 aa15.06■□□□□ 0
VPS39-206ENST00000562662 IKBKBO14920 756 aa15.05■□□□□ -0
VPS39-206ENST00000562662 HIP1RO75146 1068 aa15.05■□□□□ -0
VPS39-206ENST00000562662 TBCAO75347 108 aaKnown RBP15.05■□□□□ -0
VPS39-206ENST00000562662 LGALS2P05162 132 aa15.05■□□□□ -0
VPS39-206ENST00000562662 GAP43P17677 238 aa15.05■□□□□ -0
VPS39-206ENST00000562662 ERCC5P28715 1186 aaPredicted RBP15.05■□□□□ -0
VPS39-206ENST00000562662 MAP2K1Q02750 393 aaPredicted RBP15.05■□□□□ -0
VPS39-206ENST00000562662 TRIM32Q13049 653 aa15.05■□□□□ -0
VPS39-206ENST00000562662 PLCB4Q15147 1175 aa15.05■□□□□ -0
VPS39-206ENST00000562662 TARBP2Q15633 366 aaKnown RBP15.05■□□□□ -0
VPS39-206ENST00000562662 HERC4Q5GLZ8 1057 aaPredicted RBP15.05■□□□□ -0
VPS39-206ENST00000562662 L1TD1Q5T7N2 865 aaKnown RBP15.05■□□□□ -0
VPS39-206ENST00000562662 SFR1Q86XK3 245 aa15.05■□□□□ -0
VPS39-206ENST00000562662 GLIS3Q8NEA6 775 aa15.05■□□□□ -0
VPS39-206ENST00000562662 GLG1Q92896 1179 aa15.05■□□□□ -0
VPS39-206ENST00000562662 LENG1Q96BZ8 264 aaPredicted RBP15.05■□□□□ -0
VPS39-206ENST00000562662 FAM167AQ96KS9 214 aa15.05■□□□□ -0
VPS39-206ENST00000562662 TIPINQ9BVW5 301 aa15.05■□□□□ -0
VPS39-206ENST00000562662 FGFBP2Q9BYJ0 223 aa15.05■□□□□ -0
VPS39-206ENST00000562662 SMARCAD1Q9H4L7 1026 aa15.05■□□□□ -0
VPS39-206ENST00000562662 POLD4Q9HCU8 107 aa15.05■□□□□ -0
VPS39-206ENST00000562662 PDLIM7Q9NR12 457 aa15.05■□□□□ -0
VPS39-206ENST00000562662 SIP14410 1827 aa15.04■□□□□ -0
VPS39-206ENST00000562662 DYNC1LI2O43237 492 aaPredicted RBP15.04■□□□□ -0
VPS39-206ENST00000562662 FAM13AO94988 1023 aa15.04■□□□□ -0
VPS39-206ENST00000562662 AKR1A1P14550 325 aa15.04■□□□□ -0
VPS39-206ENST00000562662 SLC26A2P50443 739 aa15.04■□□□□ -0
VPS39-206ENST00000562662 MTERF2Q49AM1 385 aa15.04■□□□□ -0
VPS39-206ENST00000562662 TLK2Q86UE8 772 aa15.04■□□□□ -0
VPS39-206ENST00000562662 ENOX1Q8TC92 643 aaKnown RBP15.04■□□□□ -0
VPS39-206ENST00000562662 ATP8B4Q8TF62 1192 aa15.04■□□□□ -0
VPS39-206ENST00000562662 BBXQ8WY36 941 aaPredicted RBP15.04■□□□□ -0
VPS39-206ENST00000562662 FIZ1Q96SL8 496 aa15.04■□□□□ -0
VPS39-206ENST00000562662 C16orf70Q9BSU1 422 aa15.04■□□□□ -0
VPS39-206ENST00000562662 ZHX3Q9H4I2 956 aa15.04■□□□□ -0
VPS39-206ENST00000562662 PARVGQ9HBI0 331 aa15.04■□□□□ -0
VPS39-206ENST00000562662 XPNPEP1Q9NQW7 623 aa15.04■□□□□ -0
VPS39-206ENST00000562662 OLFML3Q9NRN5 406 aa15.04■□□□□ -0
VPS39-206ENST00000562662 NRBP2Q9NSY0 501 aa15.04■□□□□ -0
VPS39-206ENST00000562662 CTNND2Q9UQB3 1225 aa15.04■□□□□ -0
VPS39-206ENST00000562662 MAPK8IP1Q9UQF2 711 aa15.04■□□□□ -0
VPS39-206ENST00000562662 Q9Y3F1 56 aa15.04■□□□□ -0
VPS39-206ENST00000562662 COL4A3BPQ9Y5P4 624 aa15.04■□□□□ -0
VPS39-206ENST00000562662 HTTP42858 3142 aa15.03■□□□□ -0
VPS39-206ENST00000562662 SYNRGQ9UMZ2 1314 aa15.03■□□□□ -0
VPS39-206ENST00000562662 A6NJR5 290 aa15.03■□□□□ -0
VPS39-206ENST00000562662 SFI1A8K8P3 1242 aa15.03■□□□□ -0
VPS39-206ENST00000562662 SMTNL1A8MU46 457 aa15.03■□□□□ -0
VPS39-206ENST00000562662 BECN2A8MW95 431 aa15.03■□□□□ -0
VPS39-206ENST00000562662 PPFIA4O75335 1185 aa15.03■□□□□ -0
VPS39-206ENST00000562662 DGAT1O75907 488 aa15.03■□□□□ -0
VPS39-206ENST00000562662 ELNP15502 786 aa15.03■□□□□ -0
VPS39-206ENST00000562662 MARK3P27448 753 aa15.03■□□□□ -0
VPS39-206ENST00000562662 PPP1R2P41236 205 aa15.03■□□□□ -0
VPS39-206ENST00000562662 MYL5Q02045 173 aa15.03■□□□□ -0
VPS39-206ENST00000562662 CACNB2Q08289 660 aaPredicted RBP15.03■□□□□ -0
VPS39-206ENST00000562662 PAK1Q13153 545 aa15.03■□□□□ -0
VPS39-206ENST00000562662 STIM1Q13586 685 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms