RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TESPA1A2RU30 521 aaPredicted RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 ASB14A6NK59 587 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 POTEB2H3BUK9 544 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 PMM2O15305 246 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 DDNO94850 711 aaPredicted RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 GYPCP04921 128 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 CETPP11597 493 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 FCER1AP12319 257 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 KRT13P13646 458 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 PLS3P13797 630 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 EIF2AK2P19525 551 aaKnown RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 NR2F2P24468 414 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 CASP1P29466 404 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 YWHABP31946 246 aaKnown RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 PSMC2P35998 433 aaKnown RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 RFC5P40937 340 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 GTF2A2P52657 109 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 SNAP25P60880 206 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 LRMPQ12912 555 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 ADAM9Q13443 819 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 BAATQ14032 418 aaPredicted RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 TTLL12Q14166 644 aaPredicted RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 KCTD2Q14681 263 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 SPA17Q15506 151 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 ARHGAP29Q52LW3 1261 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 XKR3Q5GH77 459 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 ODR4Q5SWX8 454 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 INTS8Q75QN2 995 aaKnown RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 CACNA2D4Q7Z3S7 1137 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 TRIM59Q8IWR1 403 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 CDAN1Q8IWY9 1227 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 MYCT1Q8N699 235 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 SCFD1Q8WVM8 642 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 SPIRE2Q8WWL2 714 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 CDCA5Q96FF9 252 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 DYDC2Q96IM9 177 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 PPP1R13BQ96KQ4 1090 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 IFT74Q96LB3 600 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 C16orf45Q96MC5 204 aaPredicted RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 ZNF830Q96NB3 372 aaPredicted RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 ACCSQ96QU6 501 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 MED15Q96RN5 788 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 SPATC1LQ9H0A9 340 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 VPS16Q9H269 839 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 KCTD10Q9H3F6 313 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 A1CFQ9NQ94 594 aaKnown RBP8.27□□□□□ -1.09
VPS39-204ENST00000561818 HOMER2Q9NSB8 354 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 TAB2Q9NYJ8 693 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 CEP72Q9P209 647 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 SLC9A2Q9UBY0 812 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 PLAGL2Q9UPG8 496 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 PAPPA2Q9BXP8 1791 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 WDR90Q96KV7 1748 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 SPATA31C2B4DYI2 1134 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 CHMP2AO43633 222 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 STRNO43815 780 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 AFPP02771 609 aaKnown RBP8.26□□□□□ -1.09
VPS39-204ENST00000561818 ZBTB48P10074 688 aaPredicted RBP8.26□□□□□ -1.09
VPS39-204ENST00000561818 EDNRBP24530 442 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 CASP14P31944 242 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 RARRES1P49788 294 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 HIRAP54198 1017 aaPredicted RBP8.26□□□□□ -1.09
VPS39-204ENST00000561818 CYP4A11Q02928 519 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 RBL2Q08999 1139 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 PLS1Q14651 629 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 TMEM132BQ14DG7 1078 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 GPR162Q16538 588 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 IFI16Q16666 785 aaKnown RBP8.26□□□□□ -1.09
VPS39-204ENST00000561818 SLC9C1Q4G0N8 1177 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 ARSHQ5FYA8 562 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 E4F1Q66K89 784 aaPredicted RBP8.26□□□□□ -1.09
VPS39-204ENST00000561818 IQCEQ6IPM2 695 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 PADI6Q6TGC4 694 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 SLC30A10Q6XR72 485 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 KCNK18Q7Z418 384 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 ZNF467Q7Z7K2 595 aaPredicted RBP8.26□□□□□ -1.09
VPS39-204ENST00000561818 SFR1Q86XK3 245 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 IRF2BP1Q8IU81 584 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 CREBRFQ8IUR6 639 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 SYCP3Q8IZU3 236 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 MSL3Q8N5Y2 521 aaKnown RBP8.26□□□□□ -1.09
VPS39-204ENST00000561818 CCDC155Q8N6L0 562 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 RPGRIP1Q96KN7 1286 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 CCDC42Q96M95 316 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 NUDT12Q9BQG2 462 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 SEMA6BQ9H3T3 888 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 DEF6Q9H4E7 631 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 MAPK8IP1Q9UQF2 711 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 PPP2R2CQ9Y2T4 447 aa8.26□□□□□ -1.09
VPS39-204ENST00000561818 R3HCC1Q9Y3T6 440 aaKnown RBP8.26□□□□□ -1.09
VPS39-204ENST00000561818 TRIM49BA6NDI0 452 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 EIF3CLB5ME19 914 aaKnown RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 EML1O00423 815 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 DHX15O43143 795 aaKnown RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 NR3C1P04150 777 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 SLURP2P0DP57 97 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 ARP10275 920 aa8.25□□□□□ -1.09
VPS39-204ENST00000561818 MYCLP12524 364 aaPredicted RBP8.25□□□□□ -1.09
VPS39-204ENST00000561818 GTF2H1P32780 548 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 187.1 ms