RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 GCNT3O95395 438 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 TPM3P06753 285 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 TXNP10599 105 aaKnown RBP23.52■■□□□ 1.36
CLN3-209ENST00000561689 NMT1P30419 496 aaKnown RBP23.52■■□□□ 1.36
CLN3-209ENST00000561689 LRRC63Q05C16 580 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 SPAG1Q07617 926 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 SREBF2Q12772 1141 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 NR1I3Q14994 352 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 ODR4Q5SWX8 454 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 CELF3Q5SZQ8 465 aaKnown RBP23.52■■□□□ 1.36
CLN3-209ENST00000561689 EPM2AIP1Q7L775 607 aaPredicted RBP23.52■■□□□ 1.36
CLN3-209ENST00000561689 COPS5Q92905 334 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 CEP170P1Q96L14 293 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 CTAGE1Q96RT6 745 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 TAB2Q9NYJ8 693 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 SEPT9Q9UHD8 586 aaPredicted RBP23.52■■□□□ 1.36
CLN3-209ENST00000561689 MAFBQ9Y5Q3 323 aaPredicted RBP23.52■■□□□ 1.36
CLN3-209ENST00000561689 ZNFX1Q9P2E3 1918 aaKnown RBP23.52■■□□□ 1.36
CLN3-209ENST00000561689 TOMM70O94826 608 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 KIF20AO95235 890 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 ATP4AP20648 1035 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 CYP4F22Q6NT55 531 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 C17orf99Q6UX52 265 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 TSG101Q99816 390 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 KCTD10Q9H3F6 313 aa23.52■■□□□ 1.36
CLN3-209ENST00000561689 MAGEC2Q9UBF1 373 aaPredicted RBP23.52■■□□□ 1.36
CLN3-209ENST00000561689 LRRC10BA6NIK2 292 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 TEX33O43247 280 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 TTLL4Q14679 1199 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 HSDL1Q3SXM5 330 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 ZCWPW2Q504Y3 356 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 ZNF467Q7Z7K2 595 aaPredicted RBP23.51■■□□□ 1.35
CLN3-209ENST00000561689 ANKRD20A12PQ8NF67 263 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 SCFD2Q8WU76 684 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 SEPT1Q8WYJ6 367 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 MAML3Q96JK9 1138 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 PCYT2Q99447 389 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 VPS16Q9H269 839 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 ZFYVE28Q9HCC9 887 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 GPRC5CQ9NQ84 441 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.51■■□□□ 1.35
CLN3-209ENST00000561689 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.51■■□□□ 1.35
CLN3-209ENST00000561689 PLXNB2O15031 1838 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 IGKV6D-21A0A0A0MT36 114 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 SLC15A5A6NIM6 579 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 HOXD13P35453 343 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 TCF7P36402 384 aaPredicted RBP23.51■■□□□ 1.35
CLN3-209ENST00000561689 CRHR2Q13324 411 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 VSTM4Q8IW00 320 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 FAM178BQ8IXR5 827 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 DHX37Q8IY37 1157 aaKnown RBP23.51■■□□□ 1.35
CLN3-209ENST00000561689 NPLOC4Q8TAT6 608 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 FIZ1Q96SL8 496 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 SEL1LQ9UBV2 794 aa23.51■■□□□ 1.35
CLN3-209ENST00000561689 SNAI1O95863 264 aaPredicted RBP23.5■■□□□ 1.35
CLN3-209ENST00000561689 EEF1GP26641 437 aaKnown RBP23.5■■□□□ 1.35
CLN3-209ENST00000561689 COPB1P53618 953 aaKnown RBP23.5■■□□□ 1.35
CLN3-209ENST00000561689 KCNA1Q09470 495 aa23.5■■□□□ 1.35
CLN3-209ENST00000561689 ARID5BQ14865 1188 aa23.5■■□□□ 1.35
CLN3-209ENST00000561689 ZC2HC1CQ53FD0 456 aaPredicted RBP23.5■■□□□ 1.35
CLN3-209ENST00000561689 XKR3Q5GH77 459 aa23.5■■□□□ 1.35
CLN3-209ENST00000561689 TAPT1Q6NXT6 567 aa23.5■■□□□ 1.35
CLN3-209ENST00000561689 GPR20Q99678 358 aa23.5■■□□□ 1.35
CLN3-209ENST00000561689 NOP56O00567 594 aaKnown RBP23.49■■□□□ 1.35
CLN3-209ENST00000561689 N4BP3O15049 544 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 KNOP1Q1ED39 458 aaKnown RBP23.49■■□□□ 1.35
CLN3-209ENST00000561689 FILIP1LQ4L180 1135 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 FAM102BQ5T8I3 360 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 HHIPL1Q96JK4 782 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 CNOT6LQ96LI5 555 aaKnown RBP23.49■■□□□ 1.35
CLN3-209ENST00000561689 SPATA33Q96N06 139 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 CYP26B1Q9NR63 512 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 DIS3Q9Y2L1 958 aaKnown RBP23.49■■□□□ 1.35
CLN3-209ENST00000561689 TM4SF4P48230 202 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 MAMDC4Q6UXC1 1216 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 LRRC55Q6ZSA7 311 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 ZNF720Q7Z2F6 126 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 KSR1Q8IVT5 923 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 ZNF507Q8TCN5 953 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 KCNF1Q9H3M0 494 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 VTA1Q9NP79 307 aa23.49■■□□□ 1.35
CLN3-209ENST00000561689 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.49■■□□□ 1.35
CLN3-209ENST00000561689 MCM3APO60318 1980 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 OATP04181 439 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 STAT5BP51692 787 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 BMT2Q1RMZ1 405 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 MTERF2Q49AM1 385 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 MORN1Q5T089 497 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 GJC2Q5T442 439 aaPredicted RBP23.48■■□□□ 1.35
CLN3-209ENST00000561689 FAM114A1Q8IWE2 563 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 KATNBL1Q9H079 304 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 IMPACTQ9P2X3 320 aa23.48■■□□□ 1.35
CLN3-209ENST00000561689 NKRFO15226 690 aaKnown RBP eCLIP23.47■■□□□ 1.35
CLN3-209ENST00000561689 SOX10P56693 466 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 FKBP3Q00688 224 aaKnown RBP23.47■■□□□ 1.35
CLN3-209ENST00000561689 FOXR2Q6PJQ5 311 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 ZSCAN30Q86W11 494 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 DRC1Q96MC2 740 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 TINF2Q9BSI4 451 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 LARSQ9P2J5 1176 aaKnown RBP23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms