RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 GRB10Q13322 594 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 KCNK18Q7Z418 384 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 CABP7Q86V35 215 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 SERINC5Q86VE9 423 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 KCNG4Q8TDN1 519 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 PIGOQ8TEQ8 1089 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 LRRC15Q8TF66 581 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 DPF3Q92784 378 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 GDPD2Q9HCC8 539 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 NRBP2Q9NSY0 501 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 TUBE1Q9UJT0 475 aa24.36■■□□□ 1.49
SNX1-210ENST00000560260 TRIM43BA6NCK2 446 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 RRN3P2A6NIE6 340 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 EVI5O60447 810 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 TRIM71Q2Q1W2 868 aaKnown RBP24.35■■□□□ 1.49
SNX1-210ENST00000560260 HYIQ5T013 277 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 MTHFD1LQ6UB35 978 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 SYMPKQ92797 1274 aaKnown RBP24.35■■□□□ 1.49
SNX1-210ENST00000560260 TRIM43Q96BQ3 446 aaPredicted RBP24.35■■□□□ 1.49
SNX1-210ENST00000560260 PCDHA7Q9UN72 937 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 UMODL1Q5DID0 1318 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 LTBP2Q14767 1821 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 MUTP22033 750 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 TMEM119Q4V9L6 283 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 TNPO1Q92973 898 aaKnown RBP24.35■■□□□ 1.49
SNX1-210ENST00000560260 SPATA32Q96LK8 384 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 PLIN2Q99541 437 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 CYP26B1Q9NR63 512 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 DDX19AQ9NUU7 478 aaKnown RBP24.35■■□□□ 1.49
SNX1-210ENST00000560260 KIAA1024Q9UPX6 916 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 NOD1Q9Y239 953 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 STK24Q9Y6E0 443 aa24.35■■□□□ 1.49
SNX1-210ENST00000560260 CUTAO60888 179 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 GNAT1P11488 350 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 ITGB8P26012 769 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 KLRC1P26715 233 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 RARRES1P49788 294 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 PTK7Q13308 1070 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 KARSQ15046 597 aaKnown RBP24.34■■□□□ 1.49
SNX1-210ENST00000560260 ZRSR1Q15695 479 aaKnown RBP24.34■■□□□ 1.49
SNX1-210ENST00000560260 SHC4Q6S5L8 630 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 NOC4LQ9BVI4 516 aaKnown RBP24.34■■□□□ 1.49
SNX1-210ENST00000560260 CCSER1Q9C0I3 900 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 PRDM5Q9NQX1 630 aaPredicted RBP24.34■■□□□ 1.49
SNX1-210ENST00000560260 TMEM39AQ9NV64 488 aa24.34■■□□□ 1.49
SNX1-210ENST00000560260 ZMYND8Q9ULU4 1186 aaPredicted RBP24.34■■□□□ 1.49
SNX1-210ENST00000560260 TANC1Q9C0D5 1861 aa24.33■■□□□ 1.49
SNX1-210ENST00000560260 KIAA0355O15063 1070 aa24.33■■□□□ 1.48
SNX1-210ENST00000560260 UBA7P41226 1012 aa24.33■■□□□ 1.48
SNX1-210ENST00000560260 ME1P48163 572 aa24.33■■□□□ 1.48
SNX1-210ENST00000560260 LINC01465Q8N7H1 131 aa24.33■■□□□ 1.48
SNX1-210ENST00000560260 CEP170P1Q96L14 293 aa24.33■■□□□ 1.48
SNX1-210ENST00000560260 ANKEF1Q9NU02 776 aa24.33■■□□□ 1.48
SNX1-210ENST00000560260 KDM3AQ9Y4C1 1321 aa24.32■■□□□ 1.48
SNX1-210ENST00000560260 A0A087X0B3 334 aa24.32■■□□□ 1.48
SNX1-210ENST00000560260 E9PMD0 336 aa24.32■■□□□ 1.48
SNX1-210ENST00000560260 SYN1P17600 705 aa24.32■■□□□ 1.48
SNX1-210ENST00000560260 XKR9Q5GH70 373 aa24.32■■□□□ 1.48
SNX1-210ENST00000560260 NACC1Q96RE7 527 aa24.32■■□□□ 1.48
SNX1-210ENST00000560260 PPP1R12CQ9BZL4 782 aa24.32■■□□□ 1.48
SNX1-210ENST00000560260 BMP2KQ9NSY1 1161 aaPredicted RBP24.32■■□□□ 1.48
SNX1-210ENST00000560260 PCDHA2Q9Y5H9 948 aa24.32■■□□□ 1.48
SNX1-210ENST00000560260 SIP14410 1827 aa24.31■■□□□ 1.48
SNX1-210ENST00000560260 RBL2Q08999 1139 aa24.31■■□□□ 1.48
SNX1-210ENST00000560260 MKRN4PQ13434 485 aaPredicted RBP24.31■■□□□ 1.48
SNX1-210ENST00000560260 DRP2Q13474 957 aa24.31■■□□□ 1.48
SNX1-210ENST00000560260 TRAF7Q6Q0C0 670 aa24.31■■□□□ 1.48
SNX1-210ENST00000560260 LRRC71Q8N4P6 559 aa24.31■■□□□ 1.48
SNX1-210ENST00000560260 SCAND2PQ9GZW5 306 aaPredicted RBP24.31■■□□□ 1.48
SNX1-210ENST00000560260 WNT8AQ9H1J5 351 aa24.31■■□□□ 1.48
SNX1-210ENST00000560260 DBR1Q9UK59 544 aaKnown RBP24.31■■□□□ 1.48
SNX1-210ENST00000560260 EVPLQ92817 2033 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 IGKV6-21A0A0C4DH24 114 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 SLC26A4O43511 780 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 XRCC6P12956 609 aaKnown RBP eCLIP24.3■■□□□ 1.48
SNX1-210ENST00000560260 PLCG1P19174 1290 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 CLCN3P51790 818 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 TBC1D8BQ0IIM8 1120 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 OTUD6AQ7L8S5 288 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 DNAJB3Q8WWF6 145 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 FAM49AQ9H0Q0 323 aaPredicted RBP24.3■■□□□ 1.48
SNX1-210ENST00000560260 HIPK3Q9H422 1215 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 DHX33Q9H6R0 707 aaKnown RBP24.3■■□□□ 1.48
SNX1-210ENST00000560260 XPNPEP1Q9NQW7 623 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 BLOC1S4Q9NUP1 217 aa24.3■■□□□ 1.48
SNX1-210ENST00000560260 SMIM35A0A1B0GVV1 85 aa24.29■■□□□ 1.48
SNX1-210ENST00000560260 MAFO75444 373 aaPredicted RBP24.29■■□□□ 1.48
SNX1-210ENST00000560260 CYP2C18P33260 490 aa24.29■■□□□ 1.48
SNX1-210ENST00000560260 MLLT1Q03111 559 aaPredicted RBP24.29■■□□□ 1.48
SNX1-210ENST00000560260 TAF2Q6P1X5 1199 aa24.29■■□□□ 1.48
SNX1-210ENST00000560260 CDK5RAP3Q96JB5 506 aa24.29■■□□□ 1.48
SNX1-210ENST00000560260 BHMT2Q9H2M3 363 aa24.29■■□□□ 1.48
SNX1-210ENST00000560260 LOXHD1Q8IVV2 1947 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 MAGEB2O15479 319 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 EYA4O95677 639 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 CKBP12277 381 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 EMC2Q15006 297 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 RESP18Q5W5W9 173 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 KIAA0319LQ8IZA0 1049 aa24.28■■□□□ 1.48
SNX1-210ENST00000560260 CAGE1Q8TC20 777 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms