RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 GOLGA8FQ08AF8 430 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 GOLGA8DPQ0D2H9 430 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 TBC1D8BQ0IIM8 1120 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 MAN2A1Q16706 1144 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 VWA3BQ502W6 1294 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 CST9Q5W186 159 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 SWSAP1Q6NVH7 229 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 MIS18BP1Q6P0N0 1132 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 SEPT14Q6ZU15 432 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 ANO5Q75V66 913 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 OTUD6AQ7L8S5 288 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 FAM178BQ8IXR5 827 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 MORC4Q8TE76 937 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 ERGIC2Q96RQ1 377 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 NMRK2Q9NPI5 230 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 TYW1Q9NV66 732 aaKnown RBP14.01□□□□□ -0.17
USP3-213ENST00000559711 GABBR1Q9UBS5 961 aa14.01□□□□□ -0.17
USP3-213ENST00000559711 UBE4BO95155 1302 aa14□□□□□ -0.17
USP3-213ENST00000559711 BACH1O14867 736 aa14□□□□□ -0.17
USP3-213ENST00000559711 CETN3O15182 167 aa14□□□□□ -0.17
USP3-213ENST00000559711 CALUO43852 315 aaPredicted RBP14□□□□□ -0.17
USP3-213ENST00000559711 MFAP3LO75121 409 aa14□□□□□ -0.17
USP3-213ENST00000559711 PGK2P07205 417 aa14□□□□□ -0.17
USP3-213ENST00000559711 SUPT20HL2P0C7V6 817 aa14□□□□□ -0.17
USP3-213ENST00000559711 NMT1P30419 496 aaKnown RBP14□□□□□ -0.17
USP3-213ENST00000559711 ADAM9Q13443 819 aa14□□□□□ -0.17
USP3-213ENST00000559711 NFIL3Q16649 462 aa14□□□□□ -0.17
USP3-213ENST00000559711 ODR4Q5SWX8 454 aa14□□□□□ -0.17
USP3-213ENST00000559711 STXBP4Q6ZWJ1 553 aa14□□□□□ -0.17
USP3-213ENST00000559711 CYFIP1Q7L576 1253 aa14□□□□□ -0.17
USP3-213ENST00000559711 CNGA4Q8IV77 575 aa14□□□□□ -0.17
USP3-213ENST00000559711 SMCR8Q8TEV9 937 aaPredicted RBP14□□□□□ -0.17
USP3-213ENST00000559711 CCDC51Q96ER9 411 aa14□□□□□ -0.17
USP3-213ENST00000559711 PORCNQ9H237 461 aa14□□□□□ -0.17
USP3-213ENST00000559711 NDST4Q9H3R1 872 aa14□□□□□ -0.17
USP3-213ENST00000559711 LARSQ9P2J5 1176 aaKnown RBP14□□□□□ -0.17
USP3-213ENST00000559711 MORF4L1Q9UBU8 362 aa14□□□□□ -0.17
USP3-213ENST00000559711 TELO2Q9Y4R8 837 aa14□□□□□ -0.17
USP3-213ENST00000559711 PCDHB13Q9Y5F0 798 aa14□□□□□ -0.17
USP3-213ENST00000559711 IGKV6D-21A0A0A0MT36 114 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 ARHGAP6O43182 974 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 TGFB1I1O43294 461 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 PPP1R37O75864 691 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 TPM1P09493 284 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 PLS3P13797 630 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 UBA1P22314 1058 aaKnown RBP13.99□□□□□ -0.17
USP3-213ENST00000559711 FECHP22830 423 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 CASP14P31944 242 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 FXR1P51114 621 aaKnown RBP eCLIP13.99□□□□□ -0.17
USP3-213ENST00000559711 NEDD9Q14511 834 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 XKR9Q5GH70 373 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 UTP14CQ5TAP6 766 aaKnown RBP13.99□□□□□ -0.17
USP3-213ENST00000559711 KCNV1Q6PIU1 500 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 CCDC60Q8IWA6 550 aaPredicted RBP13.99□□□□□ -0.17
USP3-213ENST00000559711 CCDC43Q96MW1 224 aaKnown RBP13.99□□□□□ -0.17
USP3-213ENST00000559711 BAG1Q99933 345 aaPredicted RBP13.99□□□□□ -0.17
USP3-213ENST00000559711 EFCC1Q9HA90 598 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 MAFBQ9Y5Q3 323 aaPredicted RBP13.99□□□□□ -0.17
USP3-213ENST00000559711 LCTP09848 1927 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 SYNGAP1Q96PV0 1343 aa13.99□□□□□ -0.17
USP3-213ENST00000559711 TMEM150BA6NC51 233 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 PES1O00541 588 aaKnown RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 USO1O60763 962 aaKnown RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 NPEPPSP55786 919 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 KCNA1Q09470 495 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 MKRN3Q13064 507 aaKnown RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 ALCAMQ13740 583 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 FKBP15Q5T1M5 1219 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 E4F1Q66K89 784 aaPredicted RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 CHADLQ6NUI6 762 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 TRIM59Q8IWR1 403 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 ABRAQ8N0Z2 381 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 CCAR2Q8N163 923 aaKnown RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 RETREG2Q8NC44 543 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 CPLX3Q8WVH0 158 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 DRC1Q96MC2 740 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 PTPN18Q99952 460 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 NUP58Q9BVL2 599 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 NAA15Q9BXJ9 866 aaKnown RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 ST6GALNAC4Q9H4F1 302 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 IGSF9BQ9UPX0 1349 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 RNF225M0QZC1 329 aaPredicted RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 STRNO43815 780 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 FARP2O94887 1054 aaPredicted RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 NR2F2P24468 414 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 RPL13P26373 211 aaKnown RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 SYCP1Q15431 976 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 CCDC40Q4G0X9 1142 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 ZC2HC1CQ53FD0 456 aaPredicted RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 XKR3Q5GH77 459 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 FIGNQ5HY92 759 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 WDR78Q5VTH9 848 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 PLA2G4FQ68DD2 849 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.98□□□□□ -0.17
USP3-213ENST00000559711 FRMD5Q7Z6J6 570 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 ANKRD13CQ8N6S4 541 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 IQCDQ96DY2 449 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 TTYH3Q9C0H2 523 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 PDLIM7Q9NR12 457 aa13.98□□□□□ -0.17
USP3-213ENST00000559711 DDX41Q9UJV9 622 aaKnown RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms