RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ITKQ08881 620 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 TNFAIP1Q13829 316 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 WTAPQ15007 396 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 PKN2Q16513 984 aaKnown RBP5.88□□□□□ -1.47
LDLR-209ENST00000558528 GNPTABQ3T906 1256 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 SV2CQ496J9 727 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 ZFYVE27Q5T4F4 411 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 SYCP2LQ5T4T6 812 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 CXorf57Q6NSI4 855 aaKnown RBP5.88□□□□□ -1.47
LDLR-209ENST00000558528 OLFM4Q6UX06 510 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 NFXL1Q6ZNB6 911 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 ADGRA1Q86SQ6 560 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 SGMS1Q86VZ5 419 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 DGKHQ86XP1 1220 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 MB21D2Q8IYB1 491 aaPredicted RBP5.88□□□□□ -1.47
LDLR-209ENST00000558528 SVIPQ8NHG7 77 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 GRIN3AQ8TCU5 1115 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 TGFBRAP1Q8WUH2 860 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 SDR42E1Q8WUS8 393 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 PPM1EQ8WY54 764 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 KLHL6Q8WZ60 621 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 WASF1Q92558 559 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 BHMTQ93088 406 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 ATG4CQ96DT6 458 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 HOOK2Q96ED9 719 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 MTMR8Q96EF0 704 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 SLC39A13Q96H72 371 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 CCDC17Q96LX7 622 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 NAP1L4Q99733 375 aaKnown RBP5.88□□□□□ -1.47
LDLR-209ENST00000558528 PRDM6Q9NQX0 595 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 AASDHPPTQ9NRN7 309 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 KRT82Q9NSB4 513 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 TCP11L1Q9NUJ3 509 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 ZSWIM5Q9P217 1185 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 PI4KBQ9UBF8 816 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 REV1Q9UBZ9 1251 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 ADAM30Q9UKF2 790 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 SOX13Q9UN79 622 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 ANGEL1Q9UNK9 670 aaKnown RBP5.88□□□□□ -1.47
LDLR-209ENST00000558528 JAG2Q9Y219 1238 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 DAGLAQ9Y4D2 1042 aa5.88□□□□□ -1.47
LDLR-209ENST00000558528 A0A1W2PQU0 124 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 TSPY2A6NKD2 308 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 SLC22A31A6NKX4 558 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 F8W031 263 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 FZD9O00144 591 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 GFRA2O00451 464 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 PSMD14O00487 310 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 CPLX1O14810 134 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 FOXP2O15409 715 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 CAPN5O15484 640 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 RANBP6O60518 1105 aaKnown RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 PFKFB2O60825 505 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 RAD17O75943 681 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 FOSP01100 380 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 TSPY3P0CV98 308 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 TSPY8P0CW00 308 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 ACRP10323 421 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 CXCL9Q07325 125 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 NOGQ13253 232 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 MTMR1Q13613 665 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 MLC1Q15049 377 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 LRRC41Q15345 812 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 CFAP100Q494V2 611 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 RRP12Q5JTH9 1297 aaKnown RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 WIPI1Q5MNZ9 446 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 LHX8Q68G74 356 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 APOBEC3HQ6NTF7 200 aaKnown RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 CDC42EP5Q6NZY7 148 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 CATIPQ7Z7H3 387 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 C11orf96Q7Z7L8 435 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 PDZD3Q86UT5 571 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 FAM83AQ86UY5 434 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 CERS5Q8N5B7 392 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 FAM184AQ8NB25 1140 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 SH3RF3Q8TEJ3 882 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 ZNF384Q8TF68 577 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 LEO1Q8WVC0 666 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 BRF1Q92994 677 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 GBP4Q96PP9 640 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 MAP3K14Q99558 947 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 POP1Q99575 1024 aaKnown RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 TTC1Q99614 292 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 ANP32EQ9BTT0 268 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 ADAM19Q9H013 955 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 SOX17Q9H6I2 414 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 EPB41L4AQ9HCS5 686 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 AVENQ9NQS1 362 aaPredicted RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 ARHGEF4Q9NR80 690 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 RBM28Q9NW13 759 aaKnown RBP5.87□□□□□ -1.47
LDLR-209ENST00000558528 SERPINB13Q9UIV8 391 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 SNED1Q8TER0 1413 aa5.87□□□□□ -1.47
LDLR-209ENST00000558528 TTC28Q96AY4 2481 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 ARAP2Q8WZ64 1704 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 COL1A1P02452 1464 aaPredicted RBP5.86□□□□□ -1.47
LDLR-209ENST00000558528 FLT1P17948 1338 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 ZNF541Q9H0D2 1346 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 DCDC2BA2VCK2 349 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 YDJCA8MPS7 323 aa5.86□□□□□ -1.47
LDLR-209ENST00000558528 B4E1Z4 1266 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms