RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 TINF2Q9BSI4 451 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 SPATA9Q9BWV2 254 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 Q9UFV3 132 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 TRBV23-1A0A0A0MS06 115 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 MATN2O00339 956 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 KLF4O43474 513 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 SLC26A4O43511 780 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 SRGAP2CP0DJJ0 459 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 PYGMP11217 842 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 ECE1P42892 770 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 MAP3K12Q12852 859 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 RAB33AQ14088 237 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 STILQ15468 1287 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 TBR1Q16650 682 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 GRAMD4Q6IC98 578 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 LARP4Q71RC2 724 aaKnown RBP eCLIP4.31□□□□□ -1.72
VPS13C-205ENST00000558088 SHCBP1Q8NEM2 672 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 PCDH19Q8TAB3 1148 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 OR10A5Q9H207 317 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 MMRN2Q9H8L6 949 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 PCDHA8Q9Y5H6 950 aa4.31□□□□□ -1.72
VPS13C-205ENST00000558088 CCDC66A2RUB6 948 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 PLSCR1O15162 318 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 CLASP2O75122 1294 aaKnown RBP4.3□□□□□ -1.72
VPS13C-205ENST00000558088 C4BPAP04003 597 aaKnown RBP4.3□□□□□ -1.72
VPS13C-205ENST00000558088 MC4RP32245 332 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 DNM2P50570 870 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 JAM2P57087 298 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 GABREP78334 506 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 CD83Q01151 205 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 MTERF2Q49AM1 385 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 TRIM68Q6AZZ1 485 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 MRGPRGQ86SM5 289 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 DNAJC10Q8IXB1 793 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 CKAP2LQ8IYA6 745 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 ANKRD35Q8N283 1001 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 HIPK4Q8NE63 616 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 CALML6Q8TD86 181 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 CFHR4Q92496 578 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 ZG16BQ96DA0 208 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 TMEM176AQ96HP8 235 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 MPHOSPH9Q99550 1183 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 ZNF703Q9H7S9 590 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-205ENST00000558088 UCKL1Q9NWZ5 548 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 BTBD7Q9P203 1132 aa4.3□□□□□ -1.72
VPS13C-205ENST00000558088 PMS2P1A4D2B8 440 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 ZNF561-AS1K7EIQ3 104 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 ARVCFO00192 962 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 AMY2AP04746 511 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 MMEP08473 750 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 AMY2BP19961 511 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 SSRP1Q08945 709 aaKnown RBP4.29□□□□□ -1.72
VPS13C-205ENST00000558088 MOGSQ13724 837 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 TMEM200BQ69YZ2 307 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 ZNF662Q6ZS27 426 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 SLC43A3Q8NBI5 491 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 CRAMP1Q96RY5 1269 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 PRRX2Q99811 253 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 PPP1R1BQ9UD71 204 aaPredicted RBP4.29□□□□□ -1.72
VPS13C-205ENST00000558088 CBLCQ9ULV8 474 aa4.29□□□□□ -1.72
VPS13C-205ENST00000558088 A0A1W2PRX2 142 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 KCNK3O14649 394 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 PDPK1O15530 556 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 RAMP2O60895 175 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 STK10O94804 968 aaKnown RBP4.28□□□□□ -1.72
VPS13C-205ENST00000558088 SESN2P58004 480 aaPredicted RBP4.28□□□□□ -1.72
VPS13C-205ENST00000558088 NANOS3P60323 173 aaKnown RBP4.28□□□□□ -1.72
VPS13C-205ENST00000558088 HGFACQ04756 655 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 CNGB1Q14028 1251 aaPredicted RBP4.28□□□□□ -1.72
VPS13C-205ENST00000558088 KANK2Q63ZY3 851 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 LRSAM1Q6UWE0 723 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 ZNF575Q86XF7 245 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 TMPRSS6Q8IU80 811 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 GPR135Q8IZ08 494 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 LPPQ93052 612 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 CLIP3Q96DZ5 547 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 GBP4Q96PP9 640 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 GMLQ99445 158 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 KCNH7Q9NS40 1196 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 PCDHA9Q9Y5H5 950 aa4.28□□□□□ -1.72
VPS13C-205ENST00000558088 KRTAP23-1A1A580 65 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 SCDO00767 359 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 FOXP2O15409 715 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 HIP1RO75146 1068 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 PEX11BO96011 259 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 APEX1P27695 318 aaKnown RBP4.27□□□□□ -1.73
VPS13C-205ENST00000558088 STAT5BP51692 787 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 LACTBP83111 547 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-205ENST00000558088 RIN1Q13671 783 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 LDLRAD3Q86YD5 345 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 CISD2Q8N5K1 135 aaKnown RBP4.27□□□□□ -1.73
VPS13C-205ENST00000558088 ZBTB38Q8NAP3 1195 aaPredicted RBP4.27□□□□□ -1.73
VPS13C-205ENST00000558088 LARP4BQ92615 738 aaKnown RBP4.27□□□□□ -1.73
VPS13C-205ENST00000558088 AMNQ9BXJ7 453 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 SMURF1Q9HCE7 757 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 PFDN2Q9UHV9 154 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 VWA7Q9Y334 891 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 ASB1Q9Y576 335 aa4.27□□□□□ -1.73
VPS13C-205ENST00000558088 PRAMEF22A3QJZ6 481 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 TMEM191CA6NGB0 347 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms