RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 TIPINQ9BVW5 301 aa18.75■□□□□ 0.59
SNX1-203ENST00000558040 PTCH2Q9Y6C5 1203 aa18.75■□□□□ 0.59
SNX1-203ENST00000558040 TBCAO75347 108 aaKnown RBP18.74■□□□□ 0.59
SNX1-203ENST00000558040 INHAP05111 366 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 IDEP14735 1019 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 GUCY2CP25092 1073 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 KMT5BQ4FZB7 885 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 ARSHQ5FYA8 562 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 PLA2G4FQ68DD2 849 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 C1orf186Q6ZWK4 172 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 TRIM50Q86XT4 487 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 ATP8B4Q8TF62 1192 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 LENG1Q96BZ8 264 aaPredicted RBP18.74■□□□□ 0.59
SNX1-203ENST00000558040 DNAJC19Q96DA6 116 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 RUSC1Q9BVN2 902 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 NIFKQ9BYG3 293 aaKnown RBP18.74■□□□□ 0.59
SNX1-203ENST00000558040 CYP26B1Q9NR63 512 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 DACH1Q9UI36 760 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 ODF2LQ9ULJ1 636 aa18.74■□□□□ 0.59
SNX1-203ENST00000558040 KLRC4O43908 158 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 MSCO60682 206 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 KPNA6O60684 536 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 RHOBTB3O94955 611 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 CAVIN2O95810 425 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 ATP4AP20648 1035 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 MARK3P27448 753 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 CCND3P30281 292 aaPredicted RBP18.73■□□□□ 0.59
SNX1-203ENST00000558040 GJA9P57773 515 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 MORC3Q14149 939 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 GIT2Q14161 759 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 FSCN1Q16658 493 aaKnown RBP18.73■□□□□ 0.59
SNX1-203ENST00000558040 REEP2Q9BRK0 252 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 UPF3AQ9H1J1 476 aaKnown RBP18.73■□□□□ 0.59
SNX1-203ENST00000558040 PANK4Q9NVE7 773 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 TRPC6Q9Y210 931 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 PTPN22Q9Y2R2 807 aa18.73■□□□□ 0.59
SNX1-203ENST00000558040 TMEM150BA6NC51 233 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 ZEB2O60315 1214 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 HBP1O60381 514 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 USO1O60763 962 aaKnown RBP18.72■□□□□ 0.59
SNX1-203ENST00000558040 DGAT1O75907 488 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 ZNF286BP0CG31 522 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 GAP43P17677 238 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 RFC5P40937 340 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 NPEPPSP55786 919 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 PSMD2Q13200 908 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 PLCB4Q15147 1175 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 MTERF2Q49AM1 385 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 ZNF658Q5TYW1 1059 aaPredicted RBP18.72■□□□□ 0.59
SNX1-203ENST00000558040 ISM2Q6H9L7 571 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 EXOC8Q8IYI6 725 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 C16orf70Q9BSU1 422 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 NAT10Q9H0A0 1025 aaKnown RBP18.72■□□□□ 0.59
SNX1-203ENST00000558040 HMX1Q9NP08 348 aaPredicted RBP18.72■□□□□ 0.59
SNX1-203ENST00000558040 DDX20Q9UHI6 824 aaKnown RBP18.72■□□□□ 0.59
SNX1-203ENST00000558040 COL4A3BPQ9Y5P4 624 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 SYNRGQ9UMZ2 1314 aa18.72■□□□□ 0.59
SNX1-203ENST00000558040 NPHP3-ACAD11A0A0J9YXS1 232 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 FRMD3A2A2Y4 597 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 H3BRB1 525 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 FAM13AO94988 1023 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 C6orf222P0C671 652 aaPredicted RBP18.71■□□□□ 0.59
SNX1-203ENST00000558040 HSPA8P11142 646 aaKnown RBP18.71■□□□□ 0.59
SNX1-203ENST00000558040 POLGP54098 1239 aaPredicted RBP18.71■□□□□ 0.59
SNX1-203ENST00000558040 NKX3-2P78367 333 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 RAD51AP2Q09MP3 1159 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 COASYQ13057 564 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 MLKLQ8NB16 471 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 MCPH1Q8NEM0 835 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 DRC1Q96MC2 740 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 KATNAL1Q9BW62 490 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 ZHX3Q9H4I2 956 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 TUT1Q9H6E5 874 aaKnown RBP18.71■□□□□ 0.59
SNX1-203ENST00000558040 ATP6V0A4Q9HBG4 840 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 XPNPEP3Q9NQH7 507 aa18.71■□□□□ 0.59
SNX1-203ENST00000558040 ARID2Q68CP9 1835 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 MYL3P08590 195 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 PPP1R2P41236 205 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 CTCFP49711 727 aaPredicted RBP18.7■□□□□ 0.58
SNX1-203ENST00000558040 CACNB1Q02641 598 aaPredicted RBP18.7■□□□□ 0.58
SNX1-203ENST00000558040 DPCR1Q3MIW9 517 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 ANO6Q4KMQ2 910 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 ZNF484Q5JVG2 852 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 SLC7A3Q8WY07 619 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 JPH2Q9BR39 696 aaPredicted RBP18.7■□□□□ 0.58
SNX1-203ENST00000558040 SH2D3AQ9BRG2 576 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 SEL1LQ9UBV2 794 aa18.7■□□□□ 0.58
SNX1-203ENST00000558040 COL1A2P08123 1366 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 HIP1RO75146 1068 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 F2P00734 622 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 BEX3Q00994 111 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 TBC1D8BQ0IIM8 1120 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 STIM1Q13586 685 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 TARBP2Q15633 366 aaKnown RBP18.69■□□□□ 0.58
SNX1-203ENST00000558040 SLC9C1Q4G0N8 1177 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 HERC4Q5GLZ8 1057 aaPredicted RBP18.69■□□□□ 0.58
SNX1-203ENST00000558040 CT47A1Q5JQC4 288 aaPredicted RBP18.69■□□□□ 0.58
SNX1-203ENST00000558040 GNASQ5JWF2 1037 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 FAM26FQ5R3K3 315 aa18.69■□□□□ 0.58
SNX1-203ENST00000558040 CTU1Q7Z7A3 348 aaKnown RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms