RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 EP400NLQ6ZTU2 488 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 TRMT1LQ7Z2T5 733 aaKnown RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 CMTR2Q8IYT2 770 aaKnown RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 KIAA0319LQ8IZA0 1049 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 CLP1Q92989 425 aaKnown RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 FAM167AQ96KS9 214 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 LMAN2LQ9H0V9 348 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 ZSWIM6Q9HCJ5 1215 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 LRFN2Q9ULH4 789 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 CEP131Q9UPN4 1083 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 MAFBQ9Y5Q3 323 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-235ENST00000557740 XIRP2A4UGR9 3374 aa16.57■□□□□ 0.24
SHMT2-235ENST00000557740 WDR64B1ANS9 1081 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 ZBTB42B2RXF5 422 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 RPS6KA5O75582 802 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 C22orf31O95567 290 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 LINC00271P0C7V0 271 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 CPLX2Q6PUV4 134 aaKnown RBP16.56■□□□□ 0.24
SHMT2-235ENST00000557740 FAM43BQ6ZT52 329 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-235ENST00000557740 RTN4RL1Q86UN2 441 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-235ENST00000557740 METTL13Q8N6R0 699 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 LENG9Q96B70 501 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 PPP1R16BQ96T49 567 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 PLVAPQ9BX97 442 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 C1QTNF1Q9BXJ1 281 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 C22orf23Q9BZE7 217 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 GABBR1Q9UBS5 961 aa16.56■□□□□ 0.24
SHMT2-235ENST00000557740 TTC3P53804 2025 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 DENND3A2RUS2 1198 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 GRM6O15303 877 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 GAS7O60861 476 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 CSPG5O95196 566 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 DEXIO95424 95 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 ATP4AP20648 1035 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 PAN2Q504Q3 1202 aaKnown RBP16.55■□□□□ 0.24
SHMT2-235ENST00000557740 PABPC5Q96DU9 382 aaKnown RBP16.55■□□□□ 0.24
SHMT2-235ENST00000557740 MAP7D2Q96T17 732 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 UPF3BQ9BZI7 483 aaKnown RBP16.55■□□□□ 0.24
SHMT2-235ENST00000557740 TMX1Q9H3N1 280 aa16.55■□□□□ 0.24
SHMT2-235ENST00000557740 RNF216Q9NWF9 866 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-235ENST00000557740 NOC2LQ9Y3T9 749 aaKnown RBP16.55■□□□□ 0.24
SHMT2-235ENST00000557740 MRPL42Q9Y6G3 142 aaKnown RBP16.55■□□□□ 0.24
SHMT2-235ENST00000557740 RALGAPA2Q2PPJ7 1873 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 H3BQ06 376 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-235ENST00000557740 GPR182O15218 404 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 MSH4O15457 936 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 CHMP2AO43633 222 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 VTNP04004 478 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 COL9A1P20849 921 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 SARSP49591 514 aaKnown RBP16.54■□□□□ 0.24
SHMT2-235ENST00000557740 USP11P51784 963 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 JAK3P52333 1124 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 STK3Q13188 491 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 KIZQ2M2Z5 673 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 PUS10Q3MIT2 529 aaKnown RBP16.54■□□□□ 0.24
SHMT2-235ENST00000557740 PTCRAQ6ISU1 281 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-235ENST00000557740 TBCKQ8TEA7 893 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 TMEM40Q8WWA1 233 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 ZNF274Q96GC6 653 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-235ENST00000557740 RIT2Q99578 217 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 OSMRQ99650 979 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 TEKT3Q9BXF9 490 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 TM6SF1Q9BZW5 370 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 CDHR5Q9HBB8 845 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 ERVK-5Q9HDB9 667 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 DISC1Q9NRI5 854 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 C1orf112Q9NSG2 853 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 CLDND1Q9NY35 253 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 PCDHA4Q9UN74 947 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 PCDHB7Q9Y5E2 793 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 NLRC5Q86WI3 1866 aa16.54■□□□□ 0.24
SHMT2-235ENST00000557740 MAGEB2O15479 319 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 NCK2O43639 380 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 MMP1P03956 469 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 OATP04181 439 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 TMOD1P28289 359 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 SFNP31947 248 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 CLCN3P51790 818 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 CRYBB1P53674 252 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-235ENST00000557740 PRKCEQ02156 737 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 LRCH2Q5VUJ6 765 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 CRIPAKQ8N1N5 446 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-235ENST00000557740 NEK9Q8TD19 979 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 ADAM2Q99965 735 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 LARP6Q9BRS8 491 aaKnown RBP16.53■□□□□ 0.24
SHMT2-235ENST00000557740 ALG13Q9NP73 1137 aaKnown RBP16.53■□□□□ 0.24
SHMT2-235ENST00000557740 PDRG1Q9NUG6 133 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 ST3GAL5Q9UNP4 418 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 AKT3Q9Y243 479 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 FAM50BQ9Y247 325 aa16.53■□□□□ 0.24
SHMT2-235ENST00000557740 MGEA5O60502 916 aa16.52■□□□□ 0.24
SHMT2-235ENST00000557740 IL9P15248 144 aa16.52■□□□□ 0.24
SHMT2-235ENST00000557740 SSTR3P32745 418 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-235ENST00000557740 GATMP50440 423 aa16.52■□□□□ 0.24
SHMT2-235ENST00000557740 COL19A1Q14993 1142 aa16.52■□□□□ 0.24
SHMT2-235ENST00000557740 NAALADL2Q58DX5 795 aa16.52■□□□□ 0.24
SHMT2-235ENST00000557740 BLIDQ8IZY5 108 aa16.52■□□□□ 0.24
SHMT2-235ENST00000557740 FAM177A1Q8N128 213 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-235ENST00000557740 DAGLBQ8NCG7 672 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms