RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 ZNF185O15231 689 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 AFPP02771 609 aaKnown RBP11.13□□□□□ -0.63
TMEM260-211ENST00000556648 MYCLP12524 364 aaPredicted RBP11.13□□□□□ -0.63
TMEM260-211ENST00000556648 ZNF131P52739 623 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 PLS1Q14651 629 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 WHAMMP3Q1A5X7 153 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 PCNX4Q63HM2 1172 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 DLK2Q6UY11 383 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 NSMFQ6X4W1 530 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 SCYL3Q8IZE3 742 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 FAM133AQ8N9E0 248 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 SECISBP2LQ93073 1101 aaKnown RBP11.13□□□□□ -0.63
TMEM260-211ENST00000556648 CAPZA3Q96KX2 299 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 DRC1Q96MC2 740 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 TRERF1Q96PN7 1200 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 WRNIP1Q96S55 665 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 EDEM3Q9BZQ6 932 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 JADE2Q9NQC1 790 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 ST7Q9NRC1 585 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 PCDHB13Q9Y5F0 798 aa11.13□□□□□ -0.63
TMEM260-211ENST00000556648 EIF3DO15371 548 aaKnown RBP eCLIP11.12□□□□□ -0.63
TMEM260-211ENST00000556648 ATP9AO75110 1047 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 RHOXF2BP0C7M4 288 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 BCRP11274 1271 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 PTPRAP18433 802 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 KIF5AQ12840 1032 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 TCERG1LQ5VWI1 586 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 PAPD7Q5XG87 772 aaKnown RBP11.12□□□□□ -0.63
TMEM260-211ENST00000556648 GJB7Q6PEY0 223 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 PADI6Q6TGC4 694 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 ZNF720Q7Z2F6 126 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 MCF2L2Q86YR7 1114 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 SLC35C1Q96A29 364 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 BORCS6Q96GS4 357 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 MMS19Q96T76 1030 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 RHOXF2Q9BQY4 288 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 SIX2Q9NPC8 291 aa11.12□□□□□ -0.63
TMEM260-211ENST00000556648 TISP43B9A030 160 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 SLC16A3O15427 465 aaKnown RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 SASH3O75995 380 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 PNMA6AP0CW24 399 aaPredicted RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 EPB41P11171 864 aaKnown RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 XRCC5P13010 732 aaKnown RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 PON1P27169 355 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 MAGEA1P43355 309 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 HMGCS2P54868 508 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 BACE1P56817 501 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 MTMR1Q13613 665 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 ASIC2Q16515 512 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 ODR4Q5SWX8 454 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 CC2D1AQ6P1N0 951 aaPredicted RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 TMCO3Q6UWJ1 677 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 RNF207Q6ZRF8 634 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 NIPA1Q7RTP0 329 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 TRMT1LQ7Z2T5 733 aaKnown RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 DNAAF5Q86Y56 855 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 FAM178BQ8IXR5 827 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 REPS2Q8NFH8 660 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 TSGA10Q9BZW7 698 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 PXMP2Q9NR77 195 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 RNF146Q9NTX7 359 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 ZNF112Q9UJU3 913 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 TELO2Q9Y4R8 837 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 ZHX2Q9Y6X8 837 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 LOXHD1Q8IVV2 1947 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 SSU72P8A0A1W2PR75 194 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 CTAGE15A4D2H0 777 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 PDE2AO00408 941 aaPredicted RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 NCK2O43639 380 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 USO1O60763 962 aaKnown RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 ZBED4O75132 1171 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 CCNE2O96020 404 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 SERPING1P05155 500 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 CTAGE8P0CG41 777 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 GUCY2CP25092 1073 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 CYP2J2P51589 502 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 TUBB2AQ13885 445 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 BAATQ14032 418 aaPredicted RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 KLHDC7AQ5VTJ3 777 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 DCAF15Q66K64 600 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 CTAGE6Q86UF2 777 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 CTAGE4Q8IX94 777 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 FAM186BQ8IYM0 893 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 KCTD17Q8N5Z5 321 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 EHBP1Q8NDI1 1231 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 RBM46Q8TBY0 533 aaKnown RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 RMDN3Q96TC7 470 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 PDCD2LQ9BRP1 358 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 TUBB2BQ9BVA1 445 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 PACSIN1Q9BY11 444 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 AGPAT3Q9NRZ7 376 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 ARGLU1Q9NWB6 273 aaPredicted RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 GGA3Q9NZ52 723 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 SAMM50Q9Y512 469 aa11.11□□□□□ -0.63
TMEM260-211ENST00000556648 CTDP1Q9Y5B0 961 aaPredicted RBP11.11□□□□□ -0.63
TMEM260-211ENST00000556648 WDR90Q96KV7 1748 aa11.1□□□□□ -0.63
TMEM260-211ENST00000556648 DOCK5Q9H7D0 1870 aa11.1□□□□□ -0.63
TMEM260-211ENST00000556648 K7ENM7 598 aa11.1□□□□□ -0.63
TMEM260-211ENST00000556648 BACH1O14867 736 aa11.1□□□□□ -0.63
TMEM260-211ENST00000556648 BUB1O43683 1085 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms