RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 PNNQ9H307 717 aaKnown RBP5.08□□□□□ -1.6
ATXN3-240ENST00000556339 CNOT11Q9UKZ1 510 aaKnown RBP5.08□□□□□ -1.6
ATXN3-240ENST00000556339 PPT2Q9UMR5 302 aa5.08□□□□□ -1.6
ATXN3-240ENST00000556339 ZNF652Q9Y2D9 606 aa5.08□□□□□ -1.6
ATXN3-240ENST00000556339 DIS3Q9Y2L1 958 aaKnown RBP5.08□□□□□ -1.6
ATXN3-240ENST00000556339 CCDC88AQ3V6T2 1871 aa5.08□□□□□ -1.6
ATXN3-240ENST00000556339 SCN11AQ9UI33 1791 aa5.08□□□□□ -1.6
ATXN3-240ENST00000556339 SH3D21A4FU49 640 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 GLI4P10075 376 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 VEGFAP15692 232 aaPredicted RBP5.07□□□□□ -1.6
ATXN3-240ENST00000556339 PPP2R1AP30153 589 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 IL6STP40189 918 aaPredicted RBP5.07□□□□□ -1.6
ATXN3-240ENST00000556339 PIP4K2AP48426 406 aaPredicted RBP5.07□□□□□ -1.6
ATXN3-240ENST00000556339 SARSP49591 514 aaKnown RBP5.07□□□□□ -1.6
ATXN3-240ENST00000556339 HTRA3P83110 453 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 FSTL1Q12841 308 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 DCTN1Q14203 1278 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 TAF7Q15545 349 aaPredicted RBP5.07□□□□□ -1.6
ATXN3-240ENST00000556339 DPY19L1Q2PZI1 675 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 GNPTABQ3T906 1256 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 HEATR6Q6AI08 1181 aaKnown RBP5.07□□□□□ -1.6
ATXN3-240ENST00000556339 RUFY4Q6ZNE9 571 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 CNBD1Q8NA66 436 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 ZBTB8AQ96BR9 441 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 BRIP1Q9BX63 1249 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 MIS18AQ9NYP9 233 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 WHRNQ9P202 907 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 MYRFQ9Y2G1 1151 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 RRP7AQ9Y3A4 280 aaKnown RBP5.07□□□□□ -1.6
ATXN3-240ENST00000556339 PCDHGB7Q9Y5F8 929 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 USP16Q9Y5T5 823 aa5.07□□□□□ -1.6
ATXN3-240ENST00000556339 VIRMAQ69YN4 1812 aaKnown RBP5.07□□□□□ -1.6
ATXN3-240ENST00000556339 C10orf71Q711Q0 1435 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 C4AP0C0L4 1744 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 HEG1Q9ULI3 1381 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 GLTPD2A6NH11 291 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 PPM1BO75688 479 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 SLC9A5Q14940 896 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 RCSD1Q6JBY9 416 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 NETO2Q8NC67 525 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 SMC1BQ8NDV3 1235 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 PNISRQ8TF01 805 aaKnown RBP5.06□□□□□ -1.6
ATXN3-240ENST00000556339 TSPAN17Q96FV3 270 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 MASTLQ96GX5 879 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 HAUS7Q99871 368 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 ANP32EQ9BTT0 268 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 TMX4Q9H1E5 349 aaPredicted RBP5.06□□□□□ -1.6
ATXN3-240ENST00000556339 SMPD4Q9NXE4 827 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 GULP1Q9UBP9 304 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 ZNF214Q9UL59 606 aaPredicted RBP5.06□□□□□ -1.6
ATXN3-240ENST00000556339 NIP7Q9Y221 180 aaKnown RBP eCLIP5.06□□□□□ -1.6
ATXN3-240ENST00000556339 SUGT1Q9Y2Z0 365 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 SLC12A7Q9Y666 1083 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 SBF1O95248 1867 aa5.06□□□□□ -1.6
ATXN3-240ENST00000556339 ADCY9O60503 1353 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 MAPK8IP3Q9UPT6 1336 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 AFDNP55196 1824 aaKnown RBP5.05□□□□□ -1.6
ATXN3-240ENST00000556339 KIF13BQ9NQT8 1826 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 NPHP3-ACAD11A0A0J9YXS1 232 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 HTATSF1O43719 755 aaKnown RBP5.05□□□□□ -1.6
ATXN3-240ENST00000556339 CAMTA2O94983 1202 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 MYL6BP14649 208 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 PAMP19021 973 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 ALDH1B1P30837 517 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 MAGEA10P43363 369 aaPredicted RBP5.05□□□□□ -1.6
ATXN3-240ENST00000556339 AMPD2Q01433 879 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 SMAD4Q13485 552 aaKnown RBP5.05□□□□□ -1.6
ATXN3-240ENST00000556339 ZNF394Q53GI3 561 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 SOGA3Q5TF21 947 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 WWC2Q6AWC2 1192 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 STYK1Q6J9G0 422 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 PRR5LQ6MZQ0 368 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 CLEC4GQ6UXB4 293 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 KIF6Q6ZMV9 814 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 CPNE8Q86YQ8 564 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 LOXL4Q96JB6 756 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 TAOK3Q9H2K8 898 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 BACE2Q9Y5Z0 518 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 DUSP10Q9Y6W6 482 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 COL5A3P25940 1745 aaPredicted RBP5.05□□□□□ -1.6
ATXN3-240ENST00000556339 ZNF831Q5JPB2 1677 aa5.05□□□□□ -1.6
ATXN3-240ENST00000556339 CARMIL3Q8ND23 1372 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 NPC1L1Q9UHC9 1359 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 ARFGEF1Q9Y6D6 1849 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 KCPQ6ZWJ8 1503 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 TRBV23OR9-2A0A075B6M9 112 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 PRAMEF22A3QJZ6 481 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 C2orf71A6NGG8 1288 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 TCERG1O14776 1098 aaKnown RBP5.04□□□□□ -1.6
ATXN3-240ENST00000556339 AURKAO14965 403 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 NOBOXO60393 691 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 VAMP4O75379 141 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 SRGNP10124 158 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 CYP2C8P10632 490 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 NPR1P16066 1061 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 EIF2S2P20042 333 aaKnown RBP5.04□□□□□ -1.6
ATXN3-240ENST00000556339 RBM10P98175 930 aaKnown RBP5.04□□□□□ -1.6
ATXN3-240ENST00000556339 CACNB2Q08289 660 aaPredicted RBP5.04□□□□□ -1.6
ATXN3-240ENST00000556339 CCDC81Q6ZN84 652 aa5.04□□□□□ -1.6
ATXN3-240ENST00000556339 RTKN2Q8IZC4 609 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms