RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 PITPNM2Q9BZ72 1349 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 CLIC2O15247 247 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 RASSF3Q86WH2 238 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 DEPDC1BQ8WUY9 529 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 IGSF1Q8N6C5 1336 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 TMOD1P28289 359 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 HDAC4P56524 1084 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 CYLC2Q14093 348 aaPredicted RBP18.78■□□□□ 0.6
SYNE3-204ENST00000555759 DAB2IPQ5VWQ8 1189 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 SEPT10Q9P0V9 454 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 PDP2Q9P2J9 529 aa18.78■□□□□ 0.6
SYNE3-204ENST00000555759 HSPA4LO95757 839 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 LRRC14Q15048 493 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 ZBTB8OSQ8IWT0 167 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 TTC13Q8NBP0 860 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 SNF8Q96H20 258 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 CEP19Q96LK0 163 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 PFASO15067 1338 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 ANXA13P27216 316 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 YARSP54577 528 aaKnown RBP18.77■□□□□ 0.6
SYNE3-204ENST00000555759 ORC2Q13416 577 aaPredicted RBP18.77■□□□□ 0.6
SYNE3-204ENST00000555759 METTL16Q86W50 562 aaKnown RBP18.77■□□□□ 0.6
SYNE3-204ENST00000555759 SUGP1Q8IWZ8 645 aaKnown RBP18.77■□□□□ 0.6
SYNE3-204ENST00000555759 RIN2Q8WYP3 895 aaPredicted RBP18.77■□□□□ 0.6
SYNE3-204ENST00000555759 NACC1Q96RE7 527 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 SMYD3Q9H7B4 428 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 SMYD2Q9NRG4 433 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 DCTN4Q9UJW0 460 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 SMG5Q9UPR3 1016 aaKnown RBP18.77■□□□□ 0.6
SYNE3-204ENST00000555759 CFAP69A5D8W1 941 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 PGM1P36871 562 aa18.77■□□□□ 0.6
SYNE3-204ENST00000555759 EIF4E1BA6NMX2 242 aaKnown RBP18.77■□□□□ 0.59
SYNE3-204ENST00000555759 TMEM191BP0C7N4 346 aa18.77■□□□□ 0.59
SYNE3-204ENST00000555759 NEK2P51955 445 aa18.77■□□□□ 0.59
SYNE3-204ENST00000555759 PDXDC1Q6P996 788 aa18.77■□□□□ 0.59
SYNE3-204ENST00000555759 PROCA1Q8NCQ7 364 aaPredicted RBP18.77■□□□□ 0.59
SYNE3-204ENST00000555759 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.77■□□□□ 0.59
SYNE3-204ENST00000555759 EHD2Q9NZN4 543 aa18.77■□□□□ 0.59
SYNE3-204ENST00000555759 PCDHA1Q9Y5I3 950 aa18.77■□□□□ 0.59
SYNE3-204ENST00000555759 KCNB1Q14721 858 aa18.77■□□□□ 0.59
SYNE3-204ENST00000555759 WDR11Q9BZH6 1224 aa18.77■□□□□ 0.59
SYNE3-204ENST00000555759 AP1B1Q10567 949 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 TRMT10CQ7L0Y3 403 aaKnown RBP18.76■□□□□ 0.59
SYNE3-204ENST00000555759 DNAJC10Q8IXB1 793 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 ZIM3Q96PE6 472 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 PUS3Q9BZE2 481 aaKnown RBP18.76■□□□□ 0.59
SYNE3-204ENST00000555759 WWP1Q9H0M0 922 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 WNT8AQ9H1J5 351 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 CCDC87Q9NVE4 849 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 MED14O60244 1454 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 hCG_2014768A0A024R1R8 64 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 PHF20L1A8MW92 1017 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 DNAL1Q4LDG9 190 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 RSPH3Q86UC2 560 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 VCPKMTQ9H867 229 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 PARVGQ9HBI0 331 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 MLXIPLQ9NP71 852 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 DNAJC12Q9UKB3 198 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 GOLGA8CPA6NN73 597 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 NOP56O00567 594 aaKnown RBP18.76■□□□□ 0.59
SYNE3-204ENST00000555759 CNBD1Q8NA66 436 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 USP6NLQ92738 828 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 CFAP36Q96G28 342 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 POLR3CQ9BUI4 534 aaPredicted RBP18.76■□□□□ 0.59
SYNE3-204ENST00000555759 CD248Q9HCU0 757 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 PNMA2Q9UL42 364 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 SSU72P8A0A1W2PR75 194 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 ACADSP16219 412 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 TTLL11Q8NHH1 800 aa18.76■□□□□ 0.59
SYNE3-204ENST00000555759 ADD3Q9UEY8 706 aaKnown RBP18.76■□□□□ 0.59
SYNE3-204ENST00000555759 CFAP74Q9C0B2 1584 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 ESYT2A0FGR8 921 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 ZRANB2O95218 330 aaKnown RBP eCLIP18.75■□□□□ 0.59
SYNE3-204ENST00000555759 PPM1FP49593 454 aaPredicted RBP18.75■□□□□ 0.59
SYNE3-204ENST00000555759 IL1RL1Q01638 556 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 ACAD11Q709F0 780 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 LONP2Q86WA8 852 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 GIPC2Q8TF65 315 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 KRT82Q9NSB4 513 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 SNX5Q9Y5X3 404 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 BZW1Q7L1Q6 419 aaKnown RBP18.75■□□□□ 0.59
SYNE3-204ENST00000555759 AMNQ9BXJ7 453 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 WARS2Q9UGM6 360 aaKnown RBP18.75■□□□□ 0.59
SYNE3-204ENST00000555759 KPNA7A9QM74 516 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 HIC1Q14526 733 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 CCDC137Q6PK04 289 aaKnown RBP18.75■□□□□ 0.59
SYNE3-204ENST00000555759 SYDE1Q6ZW31 735 aaPredicted RBP18.75■□□□□ 0.59
SYNE3-204ENST00000555759 CNPY4Q8N129 248 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 ANKRD27Q96NW4 1050 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 TRPV6Q9H1D0 765 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 ZBBXA8MT70 800 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 GSTA4O15217 222 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 EPHB1P54762 984 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 REXO1L1PQ8IX06 675 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 GUF1Q8N442 669 aaKnown RBP18.75■□□□□ 0.59
SYNE3-204ENST00000555759 SLC26A7Q8TE54 656 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 TMEM51Q9NW97 253 aa18.75■□□□□ 0.59
SYNE3-204ENST00000555759 RAD9BQ6WBX8 426 aa18.74■□□□□ 0.59
SYNE3-204ENST00000555759 MB21D2Q8IYB1 491 aaPredicted RBP18.74■□□□□ 0.59
SYNE3-204ENST00000555759 KCTD6Q8NC69 237 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms