RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 MSRAQ9UJ68 235 aa21.74■■□□□ 1.07
PTCH1-227ENST00000553256 MYH9P35579 1960 aaKnown RBP21.74■■□□□ 1.07
PTCH1-227ENST00000553256 GHRP10912 638 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 FOSBP53539 338 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 GUCY1B3Q02153 619 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 MIER3Q7Z3K6 550 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 LINC01599Q8WXQ3 324 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 SEPT8Q92599 483 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 FAM167AQ96KS9 214 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 IFIH1Q9BYX4 1025 aaKnown RBP21.73■■□□□ 1.07
PTCH1-227ENST00000553256 CDHR5Q9HBB8 845 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 BRMS1Q9HCU9 246 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 SAMM50Q9Y512 469 aa21.73■■□□□ 1.07
PTCH1-227ENST00000553256 IGKV6-21A0A0C4DH24 114 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 LCHNA4D1U4 455 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 KIF28PB7ZC32 967 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 CA3P07451 260 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 HTRA4P83105 476 aaPredicted RBP21.72■■□□□ 1.07
PTCH1-227ENST00000553256 TSHZ1Q6ZSZ6 1077 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 SPRED2Q7Z698 418 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 RSPH3Q86UC2 560 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 TMEM40Q8WWA1 233 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 MYLIPQ8WY64 445 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 APBB2Q92870 758 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 C8orf76Q96K31 380 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 CELF4Q9BZC1 486 aaKnown RBP21.72■■□□□ 1.07
PTCH1-227ENST00000553256 FOXP1Q9H334 677 aaPredicted RBP21.72■■□□□ 1.07
PTCH1-227ENST00000553256 TRPV2Q9Y5S1 764 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 UNC80Q8N2C7 3258 aa21.72■■□□□ 1.07
PTCH1-227ENST00000553256 ST18O60284 1047 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 GPR32O75388 356 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 KCNJ6P48051 423 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 TAP1Q03518 808 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 TMEM62Q0P6H9 643 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 ADGRE1Q14246 886 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 IER5Q5VY09 327 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 ANO5Q75V66 913 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 RTN4RL1Q86UN2 441 aaPredicted RBP21.71■■□□□ 1.07
PTCH1-227ENST00000553256 TOP1MTQ969P6 601 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 TMEM60Q9H2L4 133 aa21.71■■□□□ 1.07
PTCH1-227ENST00000553256 A0A0C4DFX4 3053 aa21.7■■□□□ 1.06
PTCH1-227ENST00000553256 COL4A6Q14031 1691 aa21.7■■□□□ 1.06
PTCH1-227ENST00000553256 TMEM150BA6NC51 233 aa21.7■■□□□ 1.06
PTCH1-227ENST00000553256 U2AF2P26368 475 aaKnown RBP eCLIP21.7■■□□□ 1.06
PTCH1-227ENST00000553256 TRIM29Q14134 588 aa21.7■■□□□ 1.06
PTCH1-227ENST00000553256 SP7Q8TDD2 431 aaPredicted RBP21.7■■□□□ 1.06
PTCH1-227ENST00000553256 UPF2Q9HAU5 1272 aaKnown RBP21.7■■□□□ 1.06
PTCH1-227ENST00000553256 RC3H2Q9HBD1 1191 aaKnown RBP21.7■■□□□ 1.06
PTCH1-227ENST00000553256 TCEAL9Q9UHQ7 104 aa21.7■■□□□ 1.06
PTCH1-227ENST00000553256 CEP131Q9UPN4 1083 aa21.7■■□□□ 1.06
PTCH1-227ENST00000553256 EPOPA6NHQ4 379 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 ENPP3O14638 875 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 MAGEB2O15479 319 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 EPHA7Q15375 998 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 XKR3Q5GH77 459 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 CKAP2LQ8IYA6 745 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 USP38Q8NB14 1042 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 BANK1Q8NDB2 785 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 RAD9AQ99638 391 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 HSD17B14Q9BPX1 270 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 ADAMTS10Q9H324 1103 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 TMX1Q9H3N1 280 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 SLC28A3Q9HAS3 691 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 NRBP2Q9NSY0 501 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 REV3LO60673 3130 aa21.69■■□□□ 1.06
PTCH1-227ENST00000553256 EVPLQ92817 2033 aa21.68■■□□□ 1.06
PTCH1-227ENST00000553256 CD52P31358 61 aa21.68■■□□□ 1.06
PTCH1-227ENST00000553256 PSMC5P62195 406 aa21.68■■□□□ 1.06
PTCH1-227ENST00000553256 SLFN12Q8IYM2 578 aa21.68■■□□□ 1.06
PTCH1-227ENST00000553256 C4orf32Q8N8J7 132 aa21.68■■□□□ 1.06
PTCH1-227ENST00000553256 PRDM12Q9H4Q4 367 aa21.68■■□□□ 1.06
PTCH1-227ENST00000553256 ERVK-5Q9HDB9 667 aa21.68■■□□□ 1.06
PTCH1-227ENST00000553256 PADI3Q9ULW8 664 aa21.68■■□□□ 1.06
PTCH1-227ENST00000553256 TLL1O43897 1013 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 P4HBP07237 508 aaKnown RBP21.67■■□□□ 1.06
PTCH1-227ENST00000553256 LINC00271P0C7V0 271 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 QARSP47897 775 aaKnown RBP21.67■■□□□ 1.06
PTCH1-227ENST00000553256 MCM2P49736 904 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 TOB1P50616 345 aaPredicted RBP21.67■■□□□ 1.06
PTCH1-227ENST00000553256 CLCN3P51790 818 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 DRP2Q13474 957 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 PPP2R2DQ66LE6 453 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 TRMT1LQ7Z2T5 733 aaKnown RBP21.67■■□□□ 1.06
PTCH1-227ENST00000553256 NOSTRINQ8IVI9 506 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 ZNF579Q8NAF0 562 aaKnown RBP21.67■■□□□ 1.06
PTCH1-227ENST00000553256 NOC2LQ9Y3T9 749 aaKnown RBP21.67■■□□□ 1.06
PTCH1-227ENST00000553256 GTF3C3Q9Y5Q9 886 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 MYO9BQ13459 2157 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 TTC3P53804 2025 aa21.67■■□□□ 1.06
PTCH1-227ENST00000553256 NEMFO60524 1076 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 SLITRK3O94933 977 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 AMHP03971 560 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 CUL4AQ13619 759 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 SAFBQ15424 915 aaKnown RBP eCLIP21.66■■□□□ 1.06
PTCH1-227ENST00000553256 EFCAB12Q6NXP0 572 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 C4orf19Q8IY42 314 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 LRRC71Q8N4P6 559 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 SH2D3AQ9BRG2 576 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 RGL1Q9NZL6 768 aa21.66■■□□□ 1.06
PTCH1-227ENST00000553256 LINC01553A4QN01 128 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms