RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 MSL3Q8N5Y2 521 aaKnown RBP7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 ATG4CQ96DT6 458 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 MTMR8Q96EF0 704 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 MAML3Q96JK9 1138 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 RNPC3Q96LT9 517 aaKnown RBP7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 TINF2Q9BSI4 451 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 PHF20Q9BVI0 1012 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 PLVAPQ9BX97 442 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 FOXP1Q9H334 677 aaPredicted RBP7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 JMJD4Q9H9V9 463 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 GJB4Q9NTQ9 266 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 TMEM39AQ9NV64 488 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 FAM184BQ9ULE4 1060 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 ZNF232Q9UNY5 417 aa7.04□□□□□ -1.28
DEPDC4-209ENST00000550587 MROH7Q68CQ1 1323 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 PNMA6FA0A0J9YX94 578 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 hCG_1642624A0A1W2PR95 340 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 hCG_1984214I3L0E3 225 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 EML1O00423 815 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 LZTS3O60299 673 aaPredicted RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 COBLO75128 1261 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 ZBED4O75132 1171 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 CALML3P27482 149 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 GUCY1B3Q02153 619 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 DNM1Q05193 864 aaKnown RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 FPGSQ05932 587 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 SFSWAPQ12872 951 aaKnown RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 CCDC96Q2M329 555 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 TRIM60Q495X7 471 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 PRAMEF19Q5SWL8 479 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 TTBK2Q6IQ55 1244 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 SYT9Q86SS6 491 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 RIOX2Q8IUF8 465 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 ADGRF4Q8IZF3 695 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 ZNF713Q8N859 430 aaPredicted RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 PRPF38AQ8NAV1 312 aaKnown RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 PCSK9Q8NBP7 692 aaKnown RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 TRPV1Q8NER1 839 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 MAFAQ8NHW3 353 aaPredicted RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 CCDC12Q8WUD4 166 aaPredicted RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 CHURC1Q8WUH1 139 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 ZNF396Q96N95 335 aaPredicted RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 PIGSQ96S52 555 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 CDX2Q99626 313 aaPredicted RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 SCAND2PQ9GZW5 306 aaPredicted RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 UBA5Q9GZZ9 404 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 CPVLQ9H3G5 476 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 SEMA6BQ9H3T3 888 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 VAT1LQ9HCJ6 419 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 STARD7Q9NQZ5 370 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 LMBRD1Q9NUN5 540 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 BARHL2Q9NY43 387 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 SEC63Q9UGP8 760 aaKnown RBP7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 CFAP45Q9UL16 551 aa7.03□□□□□ -1.28
DEPDC4-209ENST00000550587 FRMPD2Q68DX3 1309 aaPredicted RBP7.02□□□□□ -1.28
DEPDC4-209ENST00000550587 FRMPD3Q5JV73 1810 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 ELOA3CA0A087WX78 387 aaPredicted RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 ELOA3DA6NLF2 546 aaPredicted RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 BTBD18B2RXH4 712 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TMEM232C9JQI7 657 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 VWA5AO00534 786 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 ZBTB5O15062 677 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TLR3O15455 904 aaKnown RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 PQBP1O60828 265 aaKnown RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 FOSL2P15408 326 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 KRT85P78386 507 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TLE2Q04725 743 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TRAF1Q13077 416 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 LAMC2Q13753 1193 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 GNL2Q13823 731 aaKnown RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 DOC2BQ14184 412 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TMEM132BQ14DG7 1078 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 SNX17Q15036 470 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 SKOR2Q2VWA4 1001 aaPredicted RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 ELOA3BQ3SY89 546 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 FOXD4L6Q3SYB3 417 aaPredicted RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 KIAA1755Q5JYT7 1200 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 FOXD4L3Q6VB84 417 aaPredicted RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 RASGRP2Q7LDG7 609 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 NOSTRINQ8IVI9 506 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 DIS3L2Q8IYB7 885 aaKnown RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 ANKRD35Q8N283 1001 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TMEM87AQ8NBN3 555 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 CCDC148Q8NFR7 591 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 ELOA3Q8NG57 546 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 PIBF1Q8WXW3 757 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 FAM122AQ96E09 287 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 GLT1D1Q96MS3 346 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TOX2Q96NM4 488 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 GUCD1Q96NT3 240 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TEX13BQ9BXU2 312 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 ZMYND12Q9H0C1 365 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 MTIF3Q9H2K0 278 aaKnown RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 BRMS1Q9HCU9 246 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 PDLIM7Q9NR12 457 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 VPS54Q9P1Q0 977 aa7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 TFIP11Q9UBB9 837 aaKnown RBP7.02□□□□□ -1.29
DEPDC4-209ENST00000550587 FBXO40Q9UH90 709 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms