RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 CCDC43Q96MW1 224 aaKnown RBP13.6□□□□□ -0.23
DDX55-210ENST00000543016 CLIC6Q96NY7 704 aa13.6□□□□□ -0.23
DDX55-210ENST00000543016 GBP4Q96PP9 640 aa13.6□□□□□ -0.23
DDX55-210ENST00000543016 CYP26B1Q9NR63 512 aa13.6□□□□□ -0.23
DDX55-210ENST00000543016 SETD4Q9NVD3 440 aa13.6□□□□□ -0.23
DDX55-210ENST00000543016 SEPT9Q9UHD8 586 aaPredicted RBP13.6□□□□□ -0.23
DDX55-210ENST00000543016 NOD1Q9Y239 953 aa13.6□□□□□ -0.23
DDX55-210ENST00000543016 PCDHA2Q9Y5H9 948 aa13.6□□□□□ -0.23
DDX55-210ENST00000543016 PP2D1A8MPX8 630 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 DGAT1O75907 488 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 EYA4O95677 639 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 CD4P01730 458 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 TMOD1P28289 359 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 CDC25AP30304 524 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 RTP1P59025 263 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 CDC42EP1Q00587 391 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 TLE2Q04725 743 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 TBC1D8BQ0IIM8 1120 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 PTK7Q13308 1070 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 TMEM119Q4V9L6 283 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 XKR9Q5GH70 373 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 RESP18Q5W5W9 173 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 RPAINQ86UA6 219 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 RSPH3Q86UC2 560 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 NME8Q8N427 588 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 CCDC155Q8N6L0 562 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 TMEM87AQ8NBN3 555 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 CEP170P1Q96L14 293 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 CUEDC2Q9H467 287 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 DDX19AQ9NUU7 478 aaKnown RBP13.59□□□□□ -0.23
DDX55-210ENST00000543016 KCND2Q9NZV8 630 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 WRAP73Q9P2S5 460 aaPredicted RBP13.59□□□□□ -0.23
DDX55-210ENST00000543016 STK17AQ9UEE5 414 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 TUBE1Q9UJT0 475 aa13.59□□□□□ -0.23
DDX55-210ENST00000543016 FAM237AA0A1B0GTK4 181 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 SMIM35A0A1B0GVV1 85 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 ZBTB42B2RXF5 422 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 PQBP1O60828 265 aaKnown RBP13.58□□□□□ -0.24
DDX55-210ENST00000543016 RARRES1P49788 294 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 GRB10Q13322 594 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 LRRC26Q2I0M4 334 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 TRIM60Q495X7 471 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 RRAGBQ5VZM2 374 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 GDF6Q6KF10 455 aaPredicted RBP13.58□□□□□ -0.24
DDX55-210ENST00000543016 POTEGQ6S5H5 508 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 SHC4Q6S5L8 630 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 MTHFD1LQ6UB35 978 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 FAM43BQ6ZT52 329 aaPredicted RBP13.58□□□□□ -0.24
DDX55-210ENST00000543016 SERINC5Q86VE9 423 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 CAGE1Q8TC20 777 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 SLC7A3Q8WY07 619 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 EPSTI1Q96J88 318 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 PNMA5Q96PV4 448 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 TIPINQ9BVW5 301 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 USP25Q9UHP3 1055 aa13.58□□□□□ -0.24
DDX55-210ENST00000543016 KAT6AQ92794 2004 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 CENPFP49454 3210 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 IGKV6-21A0A0C4DH24 114 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 ARHGEF35A5YM69 484 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 B4GALT4O60513 344 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 MAFO75444 373 aaPredicted RBP13.57□□□□□ -0.24
DDX55-210ENST00000543016 PARNO95453 639 aaKnown RBP13.57□□□□□ -0.24
DDX55-210ENST00000543016 CLTBP09497 229 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 KLRC1P26715 233 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 DNM2P50570 870 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 RBL2Q08999 1139 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 BFSP2Q13515 415 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 ZRSR1Q15695 479 aaKnown RBP13.57□□□□□ -0.24
DDX55-210ENST00000543016 ECM1Q16610 540 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 MTERF2Q49AM1 385 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 MARCH8Q5T0T0 291 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 IQUBQ8NA54 791 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 MCPH1Q8NEM0 835 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 PIGOQ8TEQ8 1089 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 TCP11Q8WWU5 503 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 CCDC34Q96HJ3 373 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 CEP89Q96ST8 783 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 LRRC27Q9C0I9 530 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 DHX33Q9H6R0 707 aaKnown RBP13.57□□□□□ -0.24
DDX55-210ENST00000543016 MAGEF1Q9HAY2 307 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 TRMT13Q9NUP7 481 aaKnown RBP13.57□□□□□ -0.24
DDX55-210ENST00000543016 KCNG1Q9UIX4 513 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 ATP11BQ9Y2G3 1177 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 NR2E3Q9Y5X4 410 aa13.57□□□□□ -0.24
DDX55-210ENST00000543016 GOLGA6L22H0YM25 854 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 PITPNM1O00562 1244 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 KIAA0355O15063 1070 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 TREHO43280 583 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 EVI5O60447 810 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 C22orf31O95567 290 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 CYP2C9P11712 490 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 PLCG1P19174 1290 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 STAT6P42226 847 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 POLGP54098 1239 aaPredicted RBP13.56□□□□□ -0.24
DDX55-210ENST00000543016 IGBP1P78318 339 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 FAAP100Q0VG06 881 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 KARSQ15046 597 aaKnown RBP13.56□□□□□ -0.24
DDX55-210ENST00000543016 SPECC1Q5M775 1068 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 USP49Q70CQ1 688 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 SYT2Q8N9I0 419 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms