RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RPGRIP1Q96KN7 1286 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 PCDHB7Q9Y5E2 793 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 PCDHB12Q9Y5F1 795 aa20.36■□□□□ 0.85
CLSTN3-214ENST00000542663 IGKV6D-21A0A0A0MT36 114 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 FGF18O76093 207 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 MCM5P33992 734 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 VCPP55072 806 aaKnown RBP20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 PKN1Q16512 942 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 DUSP6Q16828 381 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 TYW1BQ6NUM6 668 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 TMTC3Q6ZXV5 915 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 HEATR3Q7Z4Q2 680 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 TMTC2Q8N394 836 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 MICAL1Q8TDZ2 1067 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 TMEM87BQ96K49 555 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 PRRX2Q99811 253 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 ADAM2Q99965 735 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 SDF4Q9BRK5 362 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 RGS18Q9NS28 235 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 MYO15AQ9UKN7 3530 aa20.35■□□□□ 0.85
CLSTN3-214ENST00000542663 TBKBP1A7MCY6 615 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 C9IYK1 514 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 FSCN2O14926 492 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 RPS6KA5O75582 802 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 CCNE2O96020 404 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 CALM1P0DP23 149 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 CALM2P0DP24 149 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 CALM3P0DP25 149 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 KLRC1P26715 233 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 LIFRP42702 1097 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 KIAA0319LQ8IZA0 1049 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 COLGALT1Q8NBJ5 622 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 CWH43Q9H720 699 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 AGO4Q9HCK5 861 aaKnown RBP20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 TYW1Q9NV66 732 aaKnown RBP20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 GINS2Q9Y248 185 aa20.34■□□□□ 0.85
CLSTN3-214ENST00000542663 SLC26A2P50443 739 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 SPOUT1Q5T280 376 aaKnown RBP20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 WWC2Q6AWC2 1192 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 TMEM184AQ6ZMB5 413 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 SLC24A5Q71RS6 500 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 FANCBQ8NB91 859 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 NEK1Q96PY6 1258 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 S1PR5Q9H228 398 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 AAASQ9NRG9 546 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 C1orf112Q9NSG2 853 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 TMEM260Q9NX78 707 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 ST3GAL5Q9UNP4 418 aa20.33■□□□□ 0.85
CLSTN3-214ENST00000542663 CNTNAP5Q8WYK1 1306 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 DENND3A2RUS2 1198 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 ZBTB42B2RXF5 422 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 CEP55Q53EZ4 464 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 ABHD15Q6UXT9 468 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 CCDC60Q8IWA6 550 aaPredicted RBP20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 THNSL1Q8IYQ7 743 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 SNX27Q96L92 541 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 CDCA3Q99618 268 aaPredicted RBP20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 LRRC2Q9BYS8 371 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 RIC8AQ9NPQ8 531 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 COL1A2P08123 1366 aa20.32■□□□□ 0.84
CLSTN3-214ENST00000542663 DENND4AQ7Z401 1863 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 FSD2A1L4K1 749 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 MEIS1O00470 390 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 HBP1O60381 514 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 FGFR1P11362 822 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 APOBRQ0VD83 1088 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 PTPN21Q16825 1174 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 SYCE2Q6PIF2 218 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 FAM43BQ6ZT52 329 aaPredicted RBP20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 FAM228AQ86W67 206 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 ANO3Q9BYT9 981 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 FAM86C1Q9NVL1 165 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 SLC12A7Q9Y666 1083 aa20.31■□□□□ 0.84
CLSTN3-214ENST00000542663 CACNA1HO95180 2353 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 DDX39AO00148 427 aaKnown RBP20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 ST18O60284 1047 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 ATP4AP20648 1035 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 AVPR2P30518 371 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 FAM189BP81408 668 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 PLPP4Q5VZY2 271 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 PDE12Q6L8Q7 609 aaKnown RBP20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 ANKRD54Q6NXT1 300 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 MICU3Q86XE3 530 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 RASGRP4Q8TDF6 673 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 PPP1R16BQ96T49 567 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 LSG1Q9H089 658 aaKnown RBP20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 TMEM161AQ9NX61 479 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 LZTS1Q9Y250 596 aa20.3■□□□□ 0.84
CLSTN3-214ENST00000542663 HIDE1A8MVS5 230 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 SLC27A2O14975 620 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 GPR182O15218 404 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 DHX15O43143 795 aaKnown RBP20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 C22orf31O95567 290 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 PDGFBP01127 241 aaPredicted RBP20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 SREBF1P36956 1147 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 TECP42680 631 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 NAPAP54920 295 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 PLCB3Q01970 1234 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 DSC3Q14574 896 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 KIZQ2M2Z5 673 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms