RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 MYCP01106 439 aaPredicted RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 HNRNPCP07910 306 aaKnown RBP eCLIP12.08□□□□□ -0.48
CDH3-203ENST00000542274 SLURP2P0DP57 97 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 DPEP1P16444 411 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 RRM1P23921 792 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 ETF1P62495 437 aaKnown RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 CDK17Q00537 523 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 SAFBQ15424 915 aaKnown RBP eCLIP12.08□□□□□ -0.48
CDH3-203ENST00000542274 AOC3Q16853 763 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 CFAP157Q5JU67 520 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 SPDYCQ5MJ68 293 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 TANGO6Q9C0B7 1094 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 PPP1R1BQ9UD71 204 aaPredicted RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 DDX25Q9UHL0 483 aaKnown RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 SLC30A1Q9Y6M5 507 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 C10orf71Q711Q0 1435 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 EIF4E1BA6NMX2 242 aaKnown RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 EIF3HO15372 352 aaKnown RBP eCLIP12.08□□□□□ -0.48
CDH3-203ENST00000542274 PPP6R2O75170 966 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 STAM2O75886 525 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 SLC16A2P36021 539 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 AKAP17AQ02040 695 aaKnown RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 PPP2R3AQ06190 1150 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 PPIDQ08752 370 aaKnown RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 R3HDM1Q15032 1099 aaKnown RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 NPY5RQ15761 445 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 P3H1Q32P28 736 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 HSP90AA4PQ58FG1 418 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 SH2D4BQ5SQS7 431 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 C12orf60Q5U649 245 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 RESP18Q5W5W9 173 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 CEP128Q6ZU80 1094 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 METTL16Q86W50 562 aaKnown RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 LILRB2Q8N423 598 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 TTC39CQ8N584 583 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 IGSF22Q8N9C0 903 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 CNKSR1Q969H4 720 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 PAGR1Q9BTK6 254 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 RNF26Q9BY78 433 aaPredicted RBP12.08□□□□□ -0.48
CDH3-203ENST00000542274 CNTNAP5Q8WYK1 1306 aa12.08□□□□□ -0.48
CDH3-203ENST00000542274 OPLAHO14841 1288 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 SGTAO43765 313 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 MGEA5O60502 916 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 CDC25BP30305 580 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 USP46P62068 366 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 KLC1Q07866 573 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 MAP7Q14244 749 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 LBRQ14739 615 aaKnown RBP12.07□□□□□ -0.48
CDH3-203ENST00000542274 C4orf46Q504U0 113 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 CFAP58Q5T655 872 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 TMTC3Q6ZXV5 915 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 ZNF280CQ8ND82 737 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 SUN5Q8TC36 379 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 WASF1Q92558 559 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 GPKOWQ92917 476 aaPredicted RBP eCLIP12.07□□□□□ -0.48
CDH3-203ENST00000542274 ZNF653Q96CK0 615 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 CCT7Q99832 543 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 HAUS2Q9NVX0 235 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 ARPP21Q9UBL0 812 aaPredicted RBP12.07□□□□□ -0.48
CDH3-203ENST00000542274 FBXO2Q9UK22 296 aaPredicted RBP12.07□□□□□ -0.48
CDH3-203ENST00000542274 MYPNQ86TC9 1320 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 PSDA5PKW4 1024 aaPredicted RBP12.07□□□□□ -0.48
CDH3-203ENST00000542274 IQCA1LA6NCM1 817 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 LRRIQ3A6PVS8 624 aaPredicted RBP12.07□□□□□ -0.48
CDH3-203ENST00000542274 ORC4O43929 436 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 NPTXRO95502 500 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 CASP1P29466 404 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 GSTO1P78417 241 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 SLC35G1Q2M3R5 365 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 DAAM2Q86T65 1068 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 RSPH3Q86UC2 560 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 C7orf43Q8WVR3 580 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 KCNH3Q9ULD8 1083 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 TTF2Q9UNY4 1162 aaKnown RBP12.07□□□□□ -0.48
CDH3-203ENST00000542274 PCDHAC2Q9Y5I4 1007 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 FAM205AQ6ZU69 1335 aa12.07□□□□□ -0.48
CDH3-203ENST00000542274 MYH6P13533 1939 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 N4BP3O15049 544 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 TEX28O15482 410 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 LUC7L3O95232 432 aaKnown RBP12.06□□□□□ -0.48
CDH3-203ENST00000542274 GOLGA8HP0CJ92 632 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 CHCHD4Q8N4Q1 142 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 KRI1Q8N9T8 703 aaKnown RBP12.06□□□□□ -0.48
CDH3-203ENST00000542274 LILRB1Q8NHL6 650 aaPredicted RBP12.06□□□□□ -0.48
CDH3-203ENST00000542274 RASGRP4Q8TDF6 673 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 GOLGA1Q92805 767 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 PHF20Q9BVI0 1012 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 FOXP1Q9H334 677 aaPredicted RBP12.06□□□□□ -0.48
CDH3-203ENST00000542274 NOD2Q9HC29 1040 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 ABCB6Q9NP58 842 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 ATAD3AQ9NVI7 634 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 MYH1P12882 1939 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 POLR2DO15514 142 aaKnown RBP12.06□□□□□ -0.48
CDH3-203ENST00000542274 ECE2O60344 883 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 BAG3O95817 575 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 SYF2O95926 243 aaKnown RBP12.06□□□□□ -0.48
CDH3-203ENST00000542274 ATP1A3P13637 1013 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 BMP6P22004 513 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 ZNF174Q15697 407 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 CRY1Q16526 586 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms