RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 PLEKHH3Q7Z736 793 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 FILIP1Q7Z7B0 1213 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 NME9Q86XW9 330 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 LGI4Q8N135 537 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 TXNDC5Q8NBS9 432 aaKnown RBP4.5□□□□□ -1.69
USP28-210ENST00000542033 SMC1BQ8NDV3 1235 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 CHTF18Q8WVB6 975 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 RELTQ969Z4 430 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 E2F7Q96AV8 911 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 SCYL1Q96KG9 808 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 BARX1Q9HBU1 254 aaPredicted RBP4.5□□□□□ -1.69
USP28-210ENST00000542033 INCENPQ9NQS7 918 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 TOMM22Q9NS69 142 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 UCKL1Q9NWZ5 548 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 WASF3Q9UPY6 502 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 ASB1Q9Y576 335 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 SPO11Q9Y5K1 396 aa4.5□□□□□ -1.69
USP28-210ENST00000542033 A0A0G2JLL6 359 aaPredicted RBP4.49□□□□□ -1.69
USP28-210ENST00000542033 PRAMEF22A3QJZ6 481 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 DVL2O14641 736 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 FKBP9O95302 570 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 VIL1P09327 827 aaKnown RBP4.49□□□□□ -1.69
USP28-210ENST00000542033 SYN1P17600 705 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 MC4RP32245 332 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 CATSPEREQ5SY80 951 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 UBXN11Q5T124 520 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 ZFYVE27Q5T4F4 411 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 ZNF662Q6ZS27 426 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 FKBP9P1Q75LS8 142 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 ZZZ3Q8IYH5 903 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 EFHBQ8N7U6 833 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 STPG3Q8N7X2 389 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 CXorf38Q8TB03 319 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 CALML6Q8TD86 181 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 YTHDC1Q96MU7 727 aaKnown RBP4.49□□□□□ -1.69
USP28-210ENST00000542033 ELF4Q99607 663 aaPredicted RBP4.49□□□□□ -1.69
USP28-210ENST00000542033 TTC1Q99614 292 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 TACO1Q9BSH4 297 aaKnown RBP4.49□□□□□ -1.69
USP28-210ENST00000542033 IFT22Q9H7X7 185 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 GALNT8Q9NY28 637 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 H2AFY2Q9P0M6 372 aaPredicted RBP4.49□□□□□ -1.69
USP28-210ENST00000542033 BTBD7Q9P203 1132 aa4.49□□□□□ -1.69
USP28-210ENST00000542033 RASSF10A6NK89 507 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 ZEB2O60315 1214 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 ADCYAP1R1P41586 468 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 LSSP48449 732 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 MLLT6P55198 1093 aaPredicted RBP4.48□□□□□ -1.69
USP28-210ENST00000542033 NFKB2Q00653 900 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 SURF1Q15526 300 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 CREB3L3Q68CJ9 461 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 KLHL36Q8N4N3 616 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 ZCCHC14Q8WYQ9 949 aaKnown RBP4.48□□□□□ -1.69
USP28-210ENST00000542033 C20orf173Q96LM9 149 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 ADAM7Q9H2U9 754 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 KCND1Q9NSA2 647 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 SPTLC3Q9NUV7 552 aa4.48□□□□□ -1.69
USP28-210ENST00000542033 UBA6A0AVT1 1052 aaPredicted RBP4.47□□□□□ -1.69
USP28-210ENST00000542033 H0Y858 1186 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 GOLGA6L22H0YM25 854 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 BRINP1O60477 761 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 EIF5BO60841 1220 aaKnown RBP4.47□□□□□ -1.69
USP28-210ENST00000542033 RAB11FIP3O75154 756 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 PTX3P26022 381 aaPredicted RBP4.47□□□□□ -1.69
USP28-210ENST00000542033 CNR2P34972 360 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 ECE1P42892 770 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 ROM1Q03395 351 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 ADCY1Q08828 1119 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 RTP5Q14D33 572 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 EPHA7Q15375 998 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 WDR72Q3MJ13 1102 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 ATP13A4Q4VNC1 1196 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 TTC38Q5R3I4 469 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 ATL2Q8NHH9 583 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 BTBD2Q9BX70 525 aa4.47□□□□□ -1.69
USP28-210ENST00000542033 APOBEC2Q9Y235 224 aaKnown RBP4.47□□□□□ -1.69
USP28-210ENST00000542033 NEMP1O14524 444 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 FOXD2O60548 495 aaPredicted RBP4.46□□□□□ -1.7
USP28-210ENST00000542033 CUTAO60888 179 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 MPIG6BO95866 241 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 IL18BPO95998 194 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 KNG1P01042 644 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 BPIP17213 487 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 CD40P25942 277 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 LSP1P33241 339 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 SLC6A3Q01959 620 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 ALDH6A1Q02252 535 aaKnown RBP4.46□□□□□ -1.7
USP28-210ENST00000542033 NFATC3Q12968 1075 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 DDB1Q16531 1140 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 ZNF568Q3ZCX4 644 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 PRAMEF9Q5VWM5 478 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 TIGD7Q6NT04 549 aaPredicted RBP4.46□□□□□ -1.7
USP28-210ENST00000542033 CXXC5Q7LFL8 322 aaKnown RBP4.46□□□□□ -1.7
USP28-210ENST00000542033 OTOP2Q7RTS6 562 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 STRA8Q7Z7C7 330 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 RTN4RL1Q86UN2 441 aaPredicted RBP4.46□□□□□ -1.7
USP28-210ENST00000542033 REXO1L1PQ8IX06 675 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 IFNL2Q8IZJ0 200 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 AFAP1L2Q8N4X5 818 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 C7orf31Q8N865 590 aa4.46□□□□□ -1.7
USP28-210ENST00000542033 FOXRED1Q96CU9 486 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms