RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 TRAPPC12Q8WVT3 735 aa13.98□□□□□ -0.17
SNHG1-216ENST00000541416 ZBTB10Q96DT7 871 aa13.98□□□□□ -0.17
SNHG1-216ENST00000541416 PCYT2Q99447 389 aa13.98□□□□□ -0.17
SNHG1-216ENST00000541416 ADAM2Q99965 735 aa13.98□□□□□ -0.17
SNHG1-216ENST00000541416 GLT8D2Q9H1C3 349 aa13.98□□□□□ -0.17
SNHG1-216ENST00000541416 ATP6V0A4Q9HBG4 840 aa13.98□□□□□ -0.17
SNHG1-216ENST00000541416 RGS18Q9NS28 235 aa13.98□□□□□ -0.17
SNHG1-216ENST00000541416 TMEM260Q9NX78 707 aa13.98□□□□□ -0.17
SNHG1-216ENST00000541416 RBM8AQ9Y5S9 174 aaKnown RBP13.98□□□□□ -0.17
SNHG1-216ENST00000541416 COL1A2P08123 1366 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 SH2B2O14492 632 aaPredicted RBP13.97□□□□□ -0.17
SNHG1-216ENST00000541416 HOXB8P17481 243 aaPredicted RBP13.97□□□□□ -0.17
SNHG1-216ENST00000541416 ZNF76P36508 570 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 NUBP1P53384 320 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 NAPAP54920 295 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 TMEM266Q2M3C6 531 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 PPP1R18Q6NYC8 613 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 CMTR1Q8N1G2 835 aaKnown RBP13.97□□□□□ -0.17
SNHG1-216ENST00000541416 CCDC82Q8N4S0 544 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 FANCBQ8NB91 859 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 ATP8B4Q8TF62 1192 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 TMX1Q9H3N1 280 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 ERVK-5Q9HDB9 667 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 TCEAL9Q9UHQ7 104 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 LZTS1Q9Y250 596 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 NR2E1Q9Y466 385 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 TAF6LQ9Y6J9 622 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 PLXNA4Q9HCM2 1894 aa13.97□□□□□ -0.17
SNHG1-216ENST00000541416 CFAP54Q96N23 3096 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 hCG_1984214I3L0E3 225 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 PER2O15055 1255 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 PPM1AP35813 382 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 GATMP50440 423 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 KRT17Q04695 432 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 BMS1Q14692 1282 aaKnown RBP13.96□□□□□ -0.17
SNHG1-216ENST00000541416 PTPN21Q16825 1174 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 ZNF484Q5JVG2 852 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 IER5LQ5T953 404 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 TMEM184AQ6ZMB5 413 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 TMTC3Q6ZXV5 915 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 CKAP2LQ8IYA6 745 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 ABI1Q8IZP0 508 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 ZNF710Q8N1W2 664 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 ZNF713Q8N859 430 aaPredicted RBP13.96□□□□□ -0.17
SNHG1-216ENST00000541416 EXOC6Q8TAG9 804 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 RASGRP4Q8TDF6 673 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 SUSD6Q92537 303 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 ELAC1Q9H777 363 aaKnown RBP13.96□□□□□ -0.17
SNHG1-216ENST00000541416 AGO4Q9HCK5 861 aaKnown RBP13.96□□□□□ -0.17
SNHG1-216ENST00000541416 NGRNQ9NPE2 291 aaKnown RBP13.96□□□□□ -0.17
SNHG1-216ENST00000541416 ENTPD7Q9NQZ7 604 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 RBM28Q9NW13 759 aaKnown RBP13.96□□□□□ -0.17
SNHG1-216ENST00000541416 TMEM161AQ9NX61 479 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 ST3GAL5Q9UNP4 418 aa13.96□□□□□ -0.17
SNHG1-216ENST00000541416 FNDC1Q4ZHG4 1894 aaPredicted RBP13.95□□□□□ -0.18
SNHG1-216ENST00000541416 hCG_1642624A0A1W2PR95 340 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 ATG7O95352 703 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 RXRAP19793 462 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 ADCY7P51828 1080 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 CRYBB1P53674 252 aaPredicted RBP13.95□□□□□ -0.18
SNHG1-216ENST00000541416 AP3B2Q13367 1082 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 TPRNQ4KMQ1 711 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 CES5AQ6NT32 575 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 MIS18BP1Q6P0N0 1132 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 PDXDC2PQ6P474 469 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 NIPA1Q7RTP0 329 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 COLGALT1Q8NBJ5 622 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 MRPS27Q92552 414 aaKnown RBP13.95□□□□□ -0.18
SNHG1-216ENST00000541416 ATOH1Q92858 354 aaPredicted RBP13.95□□□□□ -0.18
SNHG1-216ENST00000541416 ANO3Q9BYT9 981 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 RIC8AQ9NPQ8 531 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 ZNF302Q9NR11 478 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 TYW1Q9NV66 732 aaKnown RBP13.95□□□□□ -0.18
SNHG1-216ENST00000541416 CEP131Q9UPN4 1083 aa13.95□□□□□ -0.18
SNHG1-216ENST00000541416 NOC2LQ9Y3T9 749 aaKnown RBP13.95□□□□□ -0.18
SNHG1-216ENST00000541416 C9IYK1 514 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 MEIS1O00470 390 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 GFRA3O60609 400 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 ARP10275 920 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 ZSCAN20P17040 1043 aaPredicted RBP13.94□□□□□ -0.18
SNHG1-216ENST00000541416 PDE4AP27815 886 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 AVPR2P30518 371 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 TECP42680 631 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 ERVFC1P60507 584 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 PLCB3Q01970 1234 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 FAM102BQ5T8I3 360 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 PLPP4Q5VZY2 271 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 ANKRD54Q6NXT1 300 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 MICU3Q86XE3 530 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 KIAA0319LQ8IZA0 1049 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 CYP2W1Q8TAV3 490 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 CASP10Q92851 521 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 SNX27Q96L92 541 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 NECTIN4Q96NY8 510 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 PHOX2BQ99453 314 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 TCF25Q9BQ70 676 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 TMEM117Q9H0C3 514 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 PCDHGC5Q9Y5F6 944 aa13.94□□□□□ -0.18
SNHG1-216ENST00000541416 IGKV6D-21A0A0A0MT36 114 aa13.93□□□□□ -0.18
SNHG1-216ENST00000541416 FSCN2O14926 492 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms