RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TYW1Q9NV66 732 aaKnown RBP15.99■□□□□ 0.15
CLIP1-216ENST00000541410 LCTP09848 1927 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 TISP43B9A030 160 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 PDXKO00764 312 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 BACH1O14867 736 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 CALUO43852 315 aaPredicted RBP15.98■□□□□ 0.15
CLIP1-216ENST00000541410 TFRCP02786 760 aaKnown RBP15.98■□□□□ 0.15
CLIP1-216ENST00000541410 ACTN1P12814 892 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 RARRES1P49788 294 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 MEA1Q16626 185 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 ZNF720Q7Z2F6 126 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 NSUN6Q8TEA1 469 aaKnown RBP15.98■□□□□ 0.15
CLIP1-216ENST00000541410 CCDC43Q96MW1 224 aaKnown RBP15.98■□□□□ 0.15
CLIP1-216ENST00000541410 PAGR1Q9BTK6 254 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 BTBD7Q9P203 1132 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 NOL4O94818 638 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 CYP2J2P51589 502 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 POLR2FP61218 127 aaKnown RBP15.98■□□□□ 0.15
CLIP1-216ENST00000541410 EAPPQ56P03 285 aaPredicted RBP15.98■□□□□ 0.15
CLIP1-216ENST00000541410 PPP4R3CPQ6ZMV5 832 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 SLC35F6Q8N357 371 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 RDH13Q8NBN7 331 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 ARHGAP20Q9P2F6 1191 aa15.98■□□□□ 0.15
CLIP1-216ENST00000541410 ARMCX3Q9UH62 379 aaPredicted RBP15.98■□□□□ 0.15
CLIP1-216ENST00000541410 RCCD1A6NED2 376 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 KIF5CO60282 957 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 GNA14O95837 355 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 HOXA7P31268 230 aaPredicted RBP15.97■□□□□ 0.15
CLIP1-216ENST00000541410 SOX10P56693 466 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 ARID5AQ03989 594 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 ELF2Q15723 593 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 FOXR2Q6PJQ5 311 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 NLRX1Q86UT6 975 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 BAP1Q92560 729 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 CARD6Q9BX69 1037 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 DUSP10Q9Y6W6 482 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 A0A1W2PQJ5 194 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 K7ENM7 598 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 SLC9A1P19634 815 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 ZNF131P52739 623 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 OAZ1P54368 228 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 BMT2Q1RMZ1 405 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 ERCC6LQ2NKX8 1250 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 XKR9Q5GH70 373 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 FIGNQ5HY92 759 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 ZC3H3Q8IXZ2 948 aaKnown RBP15.97■□□□□ 0.15
CLIP1-216ENST00000541410 ANKRD35Q8N283 1001 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 LOXHD1Q8IVV2 1947 aa15.97■□□□□ 0.15
CLIP1-216ENST00000541410 ZNF263O14978 683 aa15.96■□□□□ 0.15
CLIP1-216ENST00000541410 MARSP56192 900 aaKnown RBP15.96■□□□□ 0.15
CLIP1-216ENST00000541410 KIAA1328Q86T90 577 aa15.96■□□□□ 0.15
CLIP1-216ENST00000541410 NEK9Q8TD19 979 aa15.96■□□□□ 0.15
CLIP1-216ENST00000541410 CDCA5Q96FF9 252 aa15.96■□□□□ 0.15
CLIP1-216ENST00000541410 LACRTQ9GZZ8 138 aa15.96■□□□□ 0.15
CLIP1-216ENST00000541410 ODF2LQ9ULJ1 636 aa15.96■□□□□ 0.15
CLIP1-216ENST00000541410 PLAGL2Q9UPG8 496 aa15.96■□□□□ 0.15
CLIP1-216ENST00000541410 WDR64B1ANS9 1081 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 TUBB4AP04350 444 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 XRCC5P13010 732 aaKnown RBP15.95■□□□□ 0.14
CLIP1-216ENST00000541410 MUTP22033 750 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 GUCY2CP25092 1073 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 EIF4A3P38919 411 aaKnown RBP15.95■□□□□ 0.14
CLIP1-216ENST00000541410 SH3D19Q5HYK7 790 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 NCAPG2Q86XI2 1143 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 SYCP3Q8IZU3 236 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 KCTD17Q8N5Z5 321 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 RBM46Q8TBY0 533 aaKnown RBP15.95■□□□□ 0.14
CLIP1-216ENST00000541410 CCDC42Q96M95 316 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 GABBR1Q9UBS5 961 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 PNMA2Q9UL42 364 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 MYH10P35580 1976 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 KCNA2P16389 499 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 IREB2P48200 963 aaKnown RBP15.95■□□□□ 0.14
CLIP1-216ENST00000541410 PSMC5P62195 406 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 SP2Q02086 613 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 CCDC122Q5T0U0 273 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 SWSAP1Q6NVH7 229 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 SEPT14Q6ZU15 432 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 EEPD1Q7L9B9 569 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 INPP4AQ96PE3 977 aaPredicted RBP15.95■□□□□ 0.14
CLIP1-216ENST00000541410 KIFC3Q9BVG8 833 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 PCIF1Q9H4Z3 704 aa15.95■□□□□ 0.14
CLIP1-216ENST00000541410 MYH9P35579 1960 aaKnown RBP15.95■□□□□ 0.14
CLIP1-216ENST00000541410 ATP2A1O14983 1001 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 EPB41P11171 864 aaKnown RBP15.94■□□□□ 0.14
CLIP1-216ENST00000541410 RPL13P26373 211 aaKnown RBP15.94■□□□□ 0.14
CLIP1-216ENST00000541410 EPHX2P34913 555 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 FAM102BQ5T8I3 360 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 DPY19L2Q6NUT2 758 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 ANO5Q75V66 913 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 SAMD3Q8N6K7 520 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 ERO1AQ96HE7 468 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 DEF6Q9H4E7 631 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 EIF3DO15371 548 aaKnown RBP eCLIP15.94■□□□□ 0.14
CLIP1-216ENST00000541410 ZNF862O60290 1169 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 CYLC1P35663 651 aaPredicted RBP15.94■□□□□ 0.14
CLIP1-216ENST00000541410 PEX3P56589 373 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 KRT76Q01546 638 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 TDRD12Q587J7 1177 aaKnown RBP15.94■□□□□ 0.14
CLIP1-216ENST00000541410 PDXDC1Q6P996 788 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms