RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	BHMT2	Q9H2M3	363 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	EMILIN3	Q9NT22	766 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	PKD2L1	Q9P0L9	805 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	DNM3	Q9UQ16	869 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	RSPH10B2	B2RC85	870 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	ZBTB7A	O95365	584 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	RSPH10B	P0C881	870 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	EPB41	P11171	864 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	SLC12A3	P55017	1021 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	CXCL9	Q07325	125 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	GLE1	Q53GS7	698 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	HYI	Q5T013	277 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	IFT20	Q8IY31	132 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	CCDC43	Q96MW1	224 aa	Known RBP	13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	PACSIN1	Q9BY11	444 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	TSKS	Q9UJT2	592 aa		13.71	□□□□□ -0.21
RNF4-222	ENST00000541204	TNS1	Q9HBL0	1735 aa	Known RBP	13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	EBAG9	O00559	213 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	EGFR	P00533	1210 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	FOS	P01100	380 aa	Predicted RBP	13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	RAPGEF1	Q13905	1077 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	NAB2	Q15742	525 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204		Q4G0T1	1027 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	BTNL9	Q6UXG8	535 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	ERMN	Q8TAM6	284 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	MBOAT7	Q96N66	472 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	KRT12	Q99456	494 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	REEP2	Q9BRK0	252 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	GDF3	Q9NR23	364 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204	ADAMTS1	Q9UHI8	967 aa		13.71	□□□□□ -0.22
RNF4-222	ENST00000541204		A0A087X0T9	212 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	FAM228B	P0C875	321 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	ATP1A2	P50993	1020 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	GUCY2F	P51841	1108 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	KIAA0753	Q2KHM9	967 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	SFR1	Q86XK3	245 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	TPH2	Q8IWU9	490 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	FAM133A	Q8N9E0	248 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	PSMD1	Q99460	953 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	WDR18	Q9BV38	432 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	ZNRF3	Q9ULT6	936 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	PCDHA2	Q9Y5H9	948 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	ARFGEF1	Q9Y6D6	1849 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	PDCL	Q13371	301 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	NNT	Q13423	1086 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	TRADD	Q15628	312 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	SLC18A3	Q16572	532 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	TADA2B	Q86TJ2	420 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	SYN2	Q92777	582 aa	Predicted RBP	13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	RUSC1	Q9BVN2	902 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	NUCKS1	Q9H1E3	243 aa	Known RBP	13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	EFCC1	Q9HA90	598 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	SAMM50	Q9Y512	469 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	FAM169A	Q9Y6X4	670 aa		13.7	□□□□□ -0.22
RNF4-222	ENST00000541204	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	DDX39A	O00148	427 aa	Known RBP	13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	WNT10B	O00744	389 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	POLR2M	P0CAP2	368 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	RPA1	P27694	616 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	SF3B2	Q13435	895 aa	Known RBP	13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	ADAM9	Q13443	819 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	GIT2	Q14161	759 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	MEI1	Q5TIA1	1274 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	MICALL1	Q8N3F8	863 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	AGBL1	Q96MI9	1066 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	ZNF341	Q9BYN7	854 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	IKZF4	Q9H2S9	585 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	HOMER2	Q9NSB8	354 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	RNF14	Q9UBS8	474 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	VAV3	Q9UKW4	847 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	ZNF233	A6NK53	670 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	MYB	P10242	640 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	CAP2	P40123	477 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	KLHL30	Q0D2K2	578 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	CFAP58	Q5T655	872 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	MOXD1	Q6UVY6	613 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	TRIM59	Q8IWR1	403 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	CPXCR1	Q8N123	301 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	VCPKMT	Q9H867	229 aa		13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	LUC7L	Q9NQ29	371 aa	Known RBP	13.69	□□□□□ -0.22
RNF4-222	ENST00000541204	ZNF646	O15015	1829 aa	Predicted RBP	13.68	□□□□□ -0.22
RNF4-222	ENST00000541204		A0A087WUV0	522 aa	Predicted RBP	13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	POLD1	P28340	1107 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	SKOR1	P84550	965 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	KCNA1	Q09470	495 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	PAK2	Q13177	524 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	LRCH2	Q5VUJ6	765 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	FOXR2	Q6PJQ5	311 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	ARHGAP27	Q6ZUM4	889 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	IQCK	Q8N0W5	287 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	CASKIN2	Q8WXE0	1202 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	FAM20A	Q96MK3	541 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	CEP63	Q96MT8	703 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	PCDHGC5	Q9Y5F6	944 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	IGLV3-22	A0A075B6J6	115 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	INPP5B	P32019	993 aa		13.68	□□□□□ -0.22
RNF4-222	ENST00000541204	EPS15	P42566	896 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms