RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	P4HB	P07237	508 aa	Known RBP	10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	GHR	P10912	638 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	CD44	P16070	742 aa	Known RBP	10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	ATP2A2	P16615	1042 aa	Known RBP	10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	QARS	P47897	775 aa	Known RBP	10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	MRPS6	P82932	125 aa	Known RBP	10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	CYP4A11	Q02928	519 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	SPIRE1	Q08AE8	756 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	EPHA7	Q15375	998 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	TCTN1	Q2MV58	587 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	XKR3	Q5GH77	459 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	FAM26D	Q5JW98	314 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	IER5	Q5VY09	327 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	CNKSR3	Q6P9H4	555 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	DBF4B	Q8NFT6	615 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	SH2D3A	Q9BRG2	576 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	WRAP73	Q9P2S5	460 aa	Predicted RBP	10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	GINS2	Q9Y248	185 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	PCDHB6	Q9Y5E3	794 aa		10.36	□□□□□ -0.75
SNHG1-215	ENST00000540904	ABHD14A-ACY1	A0A1B0GW23	586 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	VPS37C	A5D8V6	355 aa	Predicted RBP	10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	POTEM	A6NI47	508 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	MAGEB2	O15479	319 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	DKC1	O60832	514 aa	Known RBP eCLIP	10.35	□□□□□ -0.75	6e-36	■■■□□ 19
SNHG1-215	ENST00000540904	STBD1	O95210	358 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	OR52Z1	P0C646	297 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	PDC	P20941	246 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	PBX2	P40425	430 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	TEC	P42680	631 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	KCNJ6	P48051	423 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	TOB1	P50616	345 aa	Predicted RBP	10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	CLCN3	P51790	818 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	MGAT3	Q09327	533 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	TBC1D8B	Q0IIM8	1120 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	ORC2	Q13416	577 aa	Predicted RBP	10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	IKBKE	Q14164	716 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	CTTN	Q14247	550 aa	Known RBP	10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	MTERF2	Q49AM1	385 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	PLEKHG4	Q58EX7	1191 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	PLA2G4F	Q68DD2	849 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	EFCAB12	Q6NXP0	572 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	ANO5	Q75V66	913 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	HSCB	Q8IWL3	235 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	TPH2	Q8IWU9	490 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	KIAA0319L	Q8IZA0	1049 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	NME8	Q8N427	588 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	SEPT8	Q92599	483 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	SNX21	Q969T3	373 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	INTS4	Q96HW7	963 aa	Known RBP	10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	DYDC2	Q96IM9	177 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	PPP1R16B	Q96T49	567 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	EIF2AK1	Q9BQI3	630 aa	Known RBP	10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	LXN	Q9BS40	222 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	NIFK	Q9BYG3	293 aa	Known RBP	10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	IFIH1	Q9BYX4	1025 aa	Known RBP	10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	SUGCT	Q9HAC7	445 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	TRPV2	Q9Y5S1	764 aa		10.35	□□□□□ -0.75
SNHG1-215	ENST00000540904	LAMA3	Q16787	3333 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	SLITRK3	O94933	977 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	VTN	P04004	478 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	HSP90AA1	P07900	732 aa	Known RBP	10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	DNAJB2	P25686	324 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	TMOD1	P28289	359 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	RABGGTB	P53611	331 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	WDR5	P61964	334 aa	Known RBP	10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	PTGDR	Q13258	359 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	LPIN1	Q14693	890 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	TARBP2	Q15633	366 aa	Known RBP	10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	KIZ	Q2M2Z5	673 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	RILPL1	Q5EBL4	403 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	GPR153	Q6NV75	609 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904		Q7L0L9	218 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	C4orf19	Q8IY42	314 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	LRRC71	Q8N4P6	559 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	DEFB123	Q8N688	67 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	CEP170P1	Q96L14	293 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	FAM161B	Q96MY7	647 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	MAP7D2	Q96T17	732 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	SLC9A7	Q96T83	725 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	PBX4	Q9BYU1	374 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	CELF4	Q9BZC1	486 aa	Known RBP	10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	ZSWIM4	Q9H7M6	989 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	AKT3	Q9Y243	479 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	TANC1	Q9C0D5	1861 aa		10.34	□□□□□ -0.75
SNHG1-215	ENST00000540904	SCN5A	Q14524	2016 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	ZBTB39	O15060	712 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	EFCAB14	O75071	495 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	SYT1	P21579	422 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	CD52	P31358	61 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	YWHAB	P31946	246 aa	Known RBP	10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	NPEPPS	P55786	919 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	DEFB103A	P81534	67 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	TMEM266	Q2M3C6	531 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	FBXO47	Q5MNV8	452 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	ZNF697	Q5TEC3	545 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	TSHZ1	Q6ZSZ6	1077 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	OTUD6A	Q7L8S5	288 aa		10.33	□□□□□ -0.76
SNHG1-215	ENST00000540904	TMCO2	Q7Z6W1	182 aa	Predicted RBP	10.33	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms