RNA–Protein interactions for RNA: ENST00000538266.5

SNHG1-208, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 347 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-208	ENST00000538266	CPSF6	Q16630	551 aa	Known RBP eCLIP	5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	SUPT20HL1	Q3ZLR7	823 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	CCDC171	Q6TFL3	1326 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	FAM214B	Q7L5A3	538 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	FAM83A	Q86UY5	434 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	PHACTR4	Q8IZ21	702 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	LCORL	Q8N3X6	602 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	TGFBRAP1	Q8WUH2	860 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	SDR42E1	Q8WUS8	393 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	RAD50	Q92878	1312 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	OSBP2	Q969R2	916 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	FAM227B	Q96M60	508 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	HEXIM2	Q96MH2	286 aa	Known RBP	5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	FERD3L	Q96RJ6	166 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	RIOK1	Q9BRS2	568 aa	Known RBP	5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	RPAP1	Q9BWH6	1393 aa	Predicted RBP	5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	IDI2	Q9BXS1	227 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	GLIS2	Q9BZE0	524 aa	Predicted RBP	5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	TMEM39B	Q9GZU3	492 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	DHX36	Q9H2U1	1008 aa	Known RBP	5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	ZNF408	Q9H9D4	720 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	ATP8A2	Q9NTI2	1148 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	MCM9	Q9NXL9	1143 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	PGAP2	Q9UHJ9	254 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	GTF2IRD1	Q9UHL9	959 aa		5.1	□□□□□ -1.59
SNHG1-208	ENST00000538266	NAV1	Q8NEY1	1877 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	FOCAD	Q5VW36	1801 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	COL2A1	P02458	1487 aa	Predicted RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	CNTNAP1	P78357	1384 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	ATRNL1	Q5VV63	1379 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	TRAF5	O00463	557 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	EIF5B	O60841	1220 aa	Known RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	DNAJA2	O60884	412 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	COBL	O75128	1261 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	REC8	O95072	547 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	MED26	O95402	600 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	SLC3A2	P08195	630 aa	Known RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	IMPDH2	P12268	514 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	FOSL1	P15407	271 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	SSTR4	P31391	388 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	GBP1	P32455	592 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	NASP	P49321	788 aa	Predicted RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	SLC4A8	Q2Y0W8	1093 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	ARSH	Q5FYA8	562 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	DCAF15	Q66K64	600 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	GIMAP6	Q6P9H5	292 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	CCDC129	Q6ZRS4	1044 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	TTC6	Q86TZ1	520 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	MAPKAPK5	Q8IW41	473 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	SLFN12	Q8IYM2	578 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	CPLX3	Q8WVH0	158 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	FAM151A	Q8WW52	585 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	ATG4C	Q96DT6	458 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	CDCA5	Q96FF9	252 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	SEC16B	Q96JE7	1060 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	CCDC74B	Q96LY2	380 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	STRBP	Q96SI9	672 aa	Known RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	SEC62	Q99442	399 aa	Known RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	KIF2C	Q99661	725 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	OSBPL5	Q9H0X9	879 aa	Predicted RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	NAPB	Q9H115	298 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	DCP1A	Q9NPI6	582 aa	Predicted RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	GMIP	Q9P107	970 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	ARPP21	Q9UBL0	812 aa	Predicted RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	SAP30BP	Q9UHR5	308 aa	Known RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	PALD1	Q9ULE6	856 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	PPT2	Q9UMR5	302 aa		5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	SCAF8	Q9UPN6	1271 aa	Known RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	GOLGB1	Q14789	3259 aa	Known RBP	5.09	□□□□□ -1.59
SNHG1-208	ENST00000538266	CDK5RAP2	Q96SN8	1893 aa		5.09	□□□□□ -1.6
SNHG1-208	ENST00000538266	MYH1	P12882	1939 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	GSG1L2	A8MUP6	293 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	SGSM2	O43147	1006 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	PRKAB2	O43741	272 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	CELF2	O95319	508 aa	Known RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	HSPD1	P10809	573 aa	Known RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	RAG1	P15918	1043 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	ATF4	P18848	351 aa	Predicted RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	SOX9	P48436	509 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	PRAMEF18	Q5VWM3	479 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	CDCP2	Q5VXM1	449 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	ARMC9	Q7Z3E5	817 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	ZNF589	Q86UQ0	364 aa	Predicted RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	C2orf69	Q8N8R5	385 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	BAHD1	Q8TBE0	780 aa	Predicted RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	CYB5D2	Q8WUJ1	264 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	DSCC1	Q9BVC3	393 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	ZNF287	Q9HBT7	754 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	DDX4	Q9NQI0	724 aa	Known RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	PRDM5	Q9NQX1	630 aa	Predicted RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	PI4KB	Q9UBF8	816 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	ZC3H7B	Q9UGR2	993 aa	Known RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	CTNNA3	Q9UI47	895 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	HERC5	Q9UII4	1024 aa	Known RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	SERPINB13	Q9UIV8	391 aa		5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	ABT1	Q9ULW3	272 aa	Known RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	DDX60L	Q5H9U9	1706 aa	Known RBP	5.08	□□□□□ -1.6
SNHG1-208	ENST00000538266	POLR2A	P24928	1970 aa	Known RBP	5.07	□□□□□ -1.6
SNHG1-208	ENST00000538266	BAZ2A	Q9UIF9	1905 aa	Known RBP	5.07	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms