RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 MAP4K1Q92918 833 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 FUCA2Q9BTY2 467 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 KANSL2Q9H9L4 492 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 ARHGEF10O15013 1369 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 CHRNDQ07001 517 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 DPCR1Q3MIW9 517 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 TMEM259Q4ZIN3 620 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 FSCBQ5H9T9 825 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 THAP9Q9H5L6 903 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 PARVGQ9HBI0 331 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 GPR108Q9NPR9 543 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 MRPL40Q9NQ50 206 aaKnown RBP11.42□□□□□ -0.58
CLIP1-209ENST00000537178 EMILIN3Q9NT22 766 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 GINM1Q9NU53 330 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 NCKAP5LQ9HCH0 1330 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 H3BRJ5 948 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 MAN1A2O60476 641 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 E2F6O75461 281 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 PDE8BO95263 885 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 RAP1GDS1P52306 607 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 C2orf54Q08AI8 447 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 SPARCL1Q14515 664 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 TRIM59Q8IWR1 403 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 SCG3Q8WXD2 468 aaKnown RBP11.42□□□□□ -0.58
CLIP1-209ENST00000537178 COPRSQ9NQ92 184 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 WARS2Q9UGM6 360 aaKnown RBP11.42□□□□□ -0.58
CLIP1-209ENST00000537178 CAPN11Q9UMQ6 739 aa11.42□□□□□ -0.58
CLIP1-209ENST00000537178 KDM3BQ7LBC6 1761 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 GTPBP10A4D1E9 387 aaKnown RBP11.41□□□□□ -0.58
CLIP1-209ENST00000537178 WDR91A4D1P6 747 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 PODXLO00592 558 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 CLIC2O15247 247 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 TADA3O75528 432 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 KRT38O76015 456 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 PAMP19021 973 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ANXA13P27216 316 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 MAGED2Q9UNF1 606 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-209ENST00000537178 AGLP35573 1532 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 NDUFA10O95299 355 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 CFAP36Q96G28 342 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 PARD6BQ9BYG5 372 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 PITPNM3Q9BZ71 974 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 IL25Q9H293 177 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 YY1AP1Q9H869 796 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ATP5HO75947 161 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 MOCS3O95396 460 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 PLS3P13797 630 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 CXCR5P32302 372 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 LLGL1Q15334 1064 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ANGPTL8Q6UXH0 198 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 PPP4R3CPQ6ZMV5 832 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 TBCKQ8TEA7 893 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 NCLNQ969V3 563 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 KLC2Q9H0B6 622 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 SNX5Q9Y5X3 404 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ZNF804BA4D1E1 1349 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 APBA3O96018 575 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ATICP31939 592 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 TMPRSS15P98073 1019 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 DOK7Q18PE1 504 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 KIF19Q2TAC6 998 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ZMYM1Q5SVZ6 1142 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ALKBH5Q6P6C2 394 aaKnown RBP11.41□□□□□ -0.58
CLIP1-209ENST00000537178 OR9Q1Q8NGQ5 310 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 PI4K2BQ8TCG2 481 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ING2Q9H160 280 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 PCIF1Q9H4Z3 704 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 NHEJ1Q9H9Q4 299 aaPredicted RBP11.41□□□□□ -0.58
CLIP1-209ENST00000537178 ZNF212Q9UDV6 495 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 NRBP1Q9UHY1 535 aa11.41□□□□□ -0.58
CLIP1-209ENST00000537178 COPEO14579 308 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 LRRC63Q05C16 580 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 NR1H3Q13133 447 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 TFDP2Q14188 446 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 KRT33BQ14525 404 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 CASP8Q14790 479 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 KRT39Q6A163 491 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 PDXDC1Q6P996 788 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 ELMSAN1Q6PJG2 1045 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 LZICQ8WZA0 190 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 DACH2Q96NX9 599 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.4□□□□□ -0.58
CLIP1-209ENST00000537178 PPARGC1AQ9UBK2 798 aaKnown RBP11.4□□□□□ -0.58
CLIP1-209ENST00000537178 APOBEC2Q9Y235 224 aaKnown RBP11.4□□□□□ -0.58
CLIP1-209ENST00000537178 DIS3Q9Y2L1 958 aaKnown RBP11.4□□□□□ -0.58
CLIP1-209ENST00000537178 LEMD3Q9Y2U8 911 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 SYCE1LA8MT33 242 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 MCF2P10911 925 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 ZC3H12BQ5HYM0 836 aaKnown RBP11.4□□□□□ -0.58
CLIP1-209ENST00000537178 ACRBPQ8NEB7 543 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 PANX2Q96RD6 677 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 CHCHD3Q9NX63 227 aaKnown RBP11.4□□□□□ -0.58
CLIP1-209ENST00000537178 RCOR1Q9UKL0 485 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 KPNA7A9QM74 516 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 ELF1P32519 619 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 CIITAP33076 1130 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 ARL4CP56559 192 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 PTK2BQ14289 1009 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 TRIP13Q15645 432 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-209ENST00000537178 GRAMD4Q6IC98 578 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms