RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 TMA7Q9Y2S6 64 aaKnown RBP7.46□□□□□ -1.22
USP28-202ENST00000535607 C5P01031 1676 aa7.46□□□□□ -1.22
USP28-202ENST00000535607 CCDC151A5D8V7 595 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 ANKRD34BA5PLL1 514 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 B2RBV5 119 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 MYO1CO00159 1063 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 IGF2BP3O00425 579 aaKnown RBP eCLIP7.45□□□□□ -1.22
USP28-202ENST00000535607 IKBKBO14920 756 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 CLGNO14967 610 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 RPS6KA5O75582 802 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 URI1O94763 535 aaPredicted RBP7.45□□□□□ -1.22
USP28-202ENST00000535607 F13BP05160 661 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 HSP90B1P14625 803 aaKnown RBP7.45□□□□□ -1.22
USP28-202ENST00000535607 CAPN2P17655 700 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 ITIH2P19823 946 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 RPS6KB1P23443 525 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 HMGB2P26583 209 aaKnown RBP7.45□□□□□ -1.22
USP28-202ENST00000535607 GSK3AP49840 483 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 EVCP57679 992 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 NECTIN1Q15223 517 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 ME3Q16798 604 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 NBPF9Q3BBW0 867 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 SV2CQ496J9 727 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 CREB3L3Q68CJ9 461 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 CEP112Q8N8E3 955 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 FBXL18Q96ME1 805 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 FMNL2Q96PY5 1086 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 HAUS7Q99871 368 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 DSCC1Q9BVC3 393 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 TRIT1Q9H3H1 467 aaKnown RBP7.45□□□□□ -1.22
USP28-202ENST00000535607 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.45□□□□□ -1.22
USP28-202ENST00000535607 RRP15Q9Y3B9 282 aaKnown RBP7.45□□□□□ -1.22
USP28-202ENST00000535607 RBM8AQ9Y5S9 174 aaKnown RBP7.45□□□□□ -1.22
USP28-202ENST00000535607 BTAF1O14981 1849 aa7.45□□□□□ -1.22
USP28-202ENST00000535607 RREB1Q92766 1687 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 LY75O60449 1722 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 TJP1Q07157 1748 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 PNMA6EA0A0J9YXQ4 647 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 A0A1W2PQ27 194 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 A0A1W2PQ64 194 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 A0A1W2PQD8 194 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 A6NNZ2 444 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 NOP56O00567 594 aaKnown RBP7.44□□□□□ -1.22
USP28-202ENST00000535607 ARHGAP6O43182 974 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 SRGAP3O43295 1099 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 TADA3O75528 432 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 CALRP27797 417 aaKnown RBP7.44□□□□□ -1.22
USP28-202ENST00000535607 GRIK1P39086 918 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 ME1P48163 572 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 EIF4A1P60842 406 aaKnown RBP7.44□□□□□ -1.22
USP28-202ENST00000535607 RESTQ13127 1097 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 SERINC3Q13530 473 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 AUHQ13825 339 aaKnown RBP7.44□□□□□ -1.22
USP28-202ENST00000535607 KRT24Q2M2I5 525 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 TUBB8Q3ZCM7 444 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 TSHZ3Q63HK5 1081 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 CC2D1AQ6P1N0 951 aaPredicted RBP7.44□□□□□ -1.22
USP28-202ENST00000535607 OLFM4Q6UX06 510 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 KRT27Q7Z3Y8 459 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 TMC6Q7Z403 805 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 SRLQ86TD4 932 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 FERMT3Q86UX7 667 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 EFCAB13Q8IY85 973 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 C10orf67Q8IYJ2 551 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 C7orf61Q8IZ16 206 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 AOPEPQ8N6M6 819 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 KCNG4Q8TDN1 519 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 DNAAF4Q8WXU2 420 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 MRPS27Q92552 414 aaKnown RBP7.44□□□□□ -1.22
USP28-202ENST00000535607 MAP4K1Q92918 833 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 UBXN6Q9BZV1 441 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 MED4Q9NPJ6 270 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 SNTG2Q9NY99 539 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 TPCN1Q9ULQ1 816 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 USP16Q9Y5T5 823 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 RFX7Q2KHR2 1363 aa7.44□□□□□ -1.22
USP28-202ENST00000535607 COL5A3P25940 1745 aaPredicted RBP7.44□□□□□ -1.22
USP28-202ENST00000535607 USP27XA6NNY8 438 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 C9IYK1 514 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 SLC27A2O14975 620 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 NPHP1O15259 732 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 DHX16O60231 1041 aaKnown RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 LMAN1P49257 510 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 RASGRF1Q13972 1273 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 MAP9Q49MG5 647 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 DCAF15Q66K64 600 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 E4F1Q66K89 784 aaPredicted RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 PPP1R42Q7Z4L9 355 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 NBPF11Q86T75 865 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 DHX40Q8IX18 779 aaKnown RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 NECAB1Q8N987 351 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 JMYQ8N9B5 988 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 FSIP1Q8NA03 581 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 ST13P5Q8NFI4 369 aaPredicted RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 CTCFLQ8NI51 663 aaPredicted RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 PIWIL2Q8TC59 973 aaKnown RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 CCDC34Q96HJ3 373 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 NCAPGQ9BPX3 1015 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 TEX13AQ9BXU3 409 aaPredicted RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 IL1RAPL2Q9NP60 686 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms