RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CEP131Q9UPN4 1083 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 PCDHB6Q9Y5E3 794 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 SQORQ9Y6N5 450 aa14.58□□□□□ -0.08
VPS28-216ENST00000533806 ABHD14A-ACY1A0A1B0GW23 586 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 TMEM150BA6NC51 233 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 GRXCR1A8MXD5 290 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 MARCH6O60337 910 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 LYPLA2O95372 231 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 ACTN1P12814 892 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 GNL2Q13823 731 aaKnown RBP14.57□□□□□ -0.08
VPS28-216ENST00000533806 LPIN1Q14693 890 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 FBXO47Q5MNV8 452 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 IER5Q5VY09 327 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 NCAPH2Q6IBW4 605 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 TRMT1LQ7Z2T5 733 aaKnown RBP14.57□□□□□ -0.08
VPS28-216ENST00000533806 PHOSPHO2Q8TCD6 241 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 DYDC2Q96IM9 177 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 EIF2AK1Q9BQI3 630 aaKnown RBP14.57□□□□□ -0.08
VPS28-216ENST00000533806 CELF4Q9BZC1 486 aaKnown RBP14.57□□□□□ -0.08
VPS28-216ENST00000533806 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.57□□□□□ -0.08
VPS28-216ENST00000533806 NOL7Q9UMY1 257 aaKnown RBP14.57□□□□□ -0.08
VPS28-216ENST00000533806 CDY2AQ9Y6F7 541 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 SLC4A7Q9Y6M7 1214 aa14.57□□□□□ -0.08
VPS28-216ENST00000533806 CHD7Q9P2D1 2997 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 H3BQV1 296 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 OR52Z1P0C646 297 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 SPATA31C1P0DKV0 1188 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 WDR5P61964 334 aaKnown RBP14.56□□□□□ -0.08
VPS28-216ENST00000533806 IKBKEQ14164 716 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 RILPL1Q5EBL4 403 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 ZNF579Q8NAF0 562 aaKnown RBP14.56□□□□□ -0.08
VPS28-216ENST00000533806 LXNQ9BS40 222 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 PBX4Q9BYU1 374 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 ZSWIM4Q9H7M6 989 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 AGO3Q9H9G7 860 aaKnown RBP14.56□□□□□ -0.08
VPS28-216ENST00000533806 CDHR5Q9HBB8 845 aa14.56□□□□□ -0.08
VPS28-216ENST00000533806 CDH23Q9H251 3354 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 POTEMA6NI47 508 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 DDX11L8A8MPP1 907 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 ZBTB39O15060 712 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 DKC1O60832 514 aaKnown RBP eCLIP14.55□□□□□ -0.08
VPS28-216ENST00000533806 EFCAB14O75071 495 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 GPR32O75388 356 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 MAFO75444 373 aaPredicted RBP14.55□□□□□ -0.08
VPS28-216ENST00000533806 GHRP10912 638 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 ATP2A2P16615 1042 aaKnown RBP14.55□□□□□ -0.08
VPS28-216ENST00000533806 SYT1P21579 422 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 PBX2P40425 430 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 FXR2P51116 673 aaKnown RBP eCLIP14.55□□□□□ -0.08
VPS28-216ENST00000533806 NPEPPSP55786 919 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 TMEM62Q0P6H9 643 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 PTGDRQ13258 359 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 CTTNQ14247 550 aaKnown RBP14.55□□□□□ -0.08
VPS28-216ENST00000533806 MCTP1Q6DN14 999 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 EFCAB12Q6NXP0 572 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 TSHZ1Q6ZSZ6 1077 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 USP38Q8NB14 1042 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 NEK9Q8TD19 979 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 SEPT8Q92599 483 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 SH2D3AQ9BRG2 576 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 IFIH1Q9BYX4 1025 aaKnown RBP14.55□□□□□ -0.08
VPS28-216ENST00000533806 TTYH1Q9H313 450 aaPredicted RBP14.55□□□□□ -0.08
VPS28-216ENST00000533806 ADAMTS10Q9H324 1103 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 TRPV2Q9Y5S1 764 aa14.55□□□□□ -0.08
VPS28-216ENST00000533806 TMEM265A0A087WTH1 108 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.54□□□□□ -0.08
VPS28-216ENST00000533806 ZBBXA8MT70 800 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 LAD1O00515 517 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 SLC34A2O95436 690 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 PDCP20941 246 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 DNAJB2P25686 324 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 YWHABP31946 246 aaKnown RBP14.54□□□□□ -0.08
VPS28-216ENST00000533806 TECP42680 631 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 CLCN3P51790 818 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 DEFB103AP81534 67 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 CYP4A11Q02928 519 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 TBC1D8BQ0IIM8 1120 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 PDIA5Q14554 519 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 IL17AQ16552 155 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 PLA2G4FQ68DD2 849 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.54□□□□□ -0.08
VPS28-216ENST00000533806 CATSPER3Q86XQ3 398 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 HERC6Q8IVU3 1022 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 LRRC71Q8N4P6 559 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 METTL13Q8N6R0 699 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 IGSF22Q8N9C0 903 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 TMEM40Q8WWA1 233 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 APBB2Q92870 758 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 SLC9A7Q96T83 725 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 POLR3CQ9BUI4 534 aaPredicted RBP14.54□□□□□ -0.08
VPS28-216ENST00000533806 DHX33Q9H6R0 707 aaKnown RBP14.54□□□□□ -0.08
VPS28-216ENST00000533806 CYP26B1Q9NR63 512 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 SEPT9Q9UHD8 586 aaPredicted RBP14.54□□□□□ -0.08
VPS28-216ENST00000533806 YBX2Q9Y2T7 364 aaKnown RBP14.54□□□□□ -0.08
VPS28-216ENST00000533806 PPME1Q9Y570 386 aa14.54□□□□□ -0.08
VPS28-216ENST00000533806 VTNP04004 478 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 TMOD1P28289 359 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 PRPHP41219 470 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 RABGGTBP53611 331 aa14.53□□□□□ -0.08
VPS28-216ENST00000533806 CRYBB1P53674 252 aaPredicted RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms