RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 HOXA2O43364 376 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 HBP1O60381 514 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 GLP2RO95838 553 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 FOSP01100 380 aaPredicted RBP13.17□□□□□ -0.3
CMTM1-216ENST00000533078 GATMP50440 423 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 ANTXR2P58335 489 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 DUSP6Q16828 381 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 IER5LQ5T953 404 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 CKAP2LQ8IYA6 745 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 ABI1Q8IZP0 508 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 CRIPAKQ8N1N5 446 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 CCDC82Q8N4S0 544 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 ATOH1Q92858 354 aaPredicted RBP13.17□□□□□ -0.3
CMTM1-216ENST00000533078 ZBTB10Q96DT7 871 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 SNX27Q96L92 541 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 ADAM2Q99965 735 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 GLT8D2Q9H1C3 349 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 NGRNQ9NPE2 291 aaKnown RBP13.17□□□□□ -0.3
CMTM1-216ENST00000533078 COL1A2P08123 1366 aa13.17□□□□□ -0.3
CMTM1-216ENST00000533078 SGSM2O43147 1006 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 GFRA3O60609 400 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 GSPT1P15170 499 aaKnown RBP13.16□□□□□ -0.3
CMTM1-216ENST00000533078 HOXB8P17481 243 aaPredicted RBP13.16□□□□□ -0.3
CMTM1-216ENST00000533078 KLRC1P26715 233 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 PPM1AP35813 382 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 TECP42680 631 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 LIFRP42702 1097 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 NUBP1P53384 320 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 NAPAP54920 295 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 KRT17Q04695 432 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 PTPN21Q16825 1174 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 CEP55Q53EZ4 464 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 ZNF484Q5JVG2 852 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 PLPP4Q5VZY2 271 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 CES5AQ6NT32 575 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 PDXDC2PQ6P474 469 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 CMTR1Q8N1G2 835 aaKnown RBP13.16□□□□□ -0.3
CMTM1-216ENST00000533078 COLGALT1Q8NBJ5 622 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 PCYT2Q99447 389 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 TMX1Q9H3N1 280 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 ERVK-5Q9HDB9 667 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 RGS18Q9NS28 235 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 ST3GAL5Q9UNP4 418 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 LZTS1Q9Y250 596 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 RBM8AQ9Y5S9 174 aaKnown RBP13.16□□□□□ -0.3
CMTM1-216ENST00000533078 PLXNA4Q9HCM2 1894 aa13.16□□□□□ -0.3
CMTM1-216ENST00000533078 DMDP11532 3685 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 hCG_1642624A0A1W2PR95 340 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 SH2B2O14492 632 aaPredicted RBP13.15□□□□□ -0.3
CMTM1-216ENST00000533078 RXRAP19793 462 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 TPRNQ4KMQ1 711 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 PPP1R18Q6NYC8 613 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 MIS18BP1Q6P0N0 1132 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 MICU3Q86XE3 530 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 TMEM87AQ8NBN3 555 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 ATP8B4Q8TF62 1192 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 SUSD6Q92537 303 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 MAP4K1Q92918 833 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 PHOX2BQ99453 314 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 TCF25Q9BQ70 676 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 ELAC1Q9H777 363 aaKnown RBP13.15□□□□□ -0.3
CMTM1-216ENST00000533078 TSHZ2Q9NRE2 1034 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 TYW1Q9NV66 732 aaKnown RBP13.15□□□□□ -0.3
CMTM1-216ENST00000533078 RBM28Q9NW13 759 aaKnown RBP13.15□□□□□ -0.3
CMTM1-216ENST00000533078 TMEM161AQ9NX61 479 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 CEP131Q9UPN4 1083 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 NOC2LQ9Y3T9 749 aaKnown RBP13.15□□□□□ -0.3
CMTM1-216ENST00000533078 PCDHGC5Q9Y5F6 944 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 TAF6LQ9Y6J9 622 aa13.15□□□□□ -0.3
CMTM1-216ENST00000533078 FNDC1Q4ZHG4 1894 aaPredicted RBP13.14□□□□□ -0.31
CMTM1-216ENST00000533078 hCG_1984214I3L0E3 225 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 DDX39AO00148 427 aaKnown RBP13.14□□□□□ -0.31
CMTM1-216ENST00000533078 ZSCAN20P17040 1043 aaPredicted RBP13.14□□□□□ -0.31
CMTM1-216ENST00000533078 AVPR2P30518 371 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 CA8P35219 290 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 ADCY7P51828 1080 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 CRYBB1P53674 252 aaPredicted RBP13.14□□□□□ -0.31
CMTM1-216ENST00000533078 ERVFC1P60507 584 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 PLCB3Q01970 1234 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 TCF15Q12870 199 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 AP3B2Q13367 1082 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 FAM102BQ5T8I3 360 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 ANKRD54Q6NXT1 300 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 LLGL2Q6P1M3 1020 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 TMTC3Q6ZXV5 915 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 TMC7Q7Z402 723 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 UBALD2Q8IYN6 164 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 LRRC43Q8N309 656 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 METTL13Q8N6R0 699 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 ZNF713Q8N859 430 aaPredicted RBP13.14□□□□□ -0.31
CMTM1-216ENST00000533078 FANCBQ8NB91 859 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 EXOC6Q8TAG9 804 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 RASGRP4Q8TDF6 673 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 MRPS27Q92552 414 aaKnown RBP13.14□□□□□ -0.31
CMTM1-216ENST00000533078 CASP10Q92851 521 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 ZNF558Q96NG5 402 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 NECTIN4Q96NY8 510 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 TMEM117Q9H0C3 514 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 AGO4Q9HCK5 861 aaKnown RBP13.14□□□□□ -0.31
CMTM1-216ENST00000533078 RIC8AQ9NPQ8 531 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms