RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 REXO1Q8N1G1 1221 aaKnown RBP12.9□□□□□ -0.34
VPS28-214ENST00000531032 FBXL16Q8N461 479 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 FAM122AQ96E09 287 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 ERVK-5Q9HDB9 667 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 ALG13Q9NP73 1137 aaKnown RBP12.9□□□□□ -0.34
VPS28-214ENST00000531032 ZNF302Q9NR11 478 aa12.9□□□□□ -0.34
VPS28-214ENST00000531032 NAP1L2Q9ULW6 460 aaPredicted RBP12.9□□□□□ -0.34
VPS28-214ENST00000531032 C19orf67A6NJJ6 358 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 PRPF3O43395 683 aaKnown RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 MGEA5O60502 916 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 C22orf31O95567 290 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 ITGB1P05556 798 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 ALADP13716 330 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 CPA1P15085 419 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 DNAJB1P25685 340 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 HSPA4P34932 840 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 SARSP49591 514 aaKnown RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 DLX2Q07687 328 aaPredicted RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 ZNF746Q6NUN9 644 aaPredicted RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 SWSAP1Q6NVH7 229 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 Q6ZUG5 572 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 ADHFE1Q8IWW8 467 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 SPPL3Q8TCT6 385 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 CCDC12Q8WUD4 166 aaPredicted RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 TMEM40Q8WWA1 233 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 BBXQ8WY36 941 aaPredicted RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 BRF1Q92994 677 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 ZNF577Q9BSK1 485 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 AGXT2Q9BYV1 514 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 CDHR5Q9HBB8 845 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 C6orf50Q9HD87 102 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 TBC1D22BQ9NU19 505 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 NOC2LQ9Y3T9 749 aaKnown RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 MAFBQ9Y5Q3 323 aaPredicted RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 EVPLQ92817 2033 aa12.89□□□□□ -0.35
VPS28-214ENST00000531032 FNDC1Q4ZHG4 1894 aaPredicted RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 MYH9P35579 1960 aaKnown RBP12.89□□□□□ -0.35
VPS28-214ENST00000531032 C5orf42Q9H799 3197 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 PRR33A8MZF0 331 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 TBX10O75333 385 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 RPS6KA5O75582 802 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 NEFLP07196 543 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 GNA11P29992 359 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 CIITAP33076 1130 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 GTF2F1P35269 517 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS28-214ENST00000531032 GATMP50440 423 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 NFX1Q12986 1120 aaKnown RBP12.88□□□□□ -0.35
VPS28-214ENST00000531032 SMAD2Q15796 467 aaKnown RBP12.88□□□□□ -0.35
VPS28-214ENST00000531032 PAN2Q504Q3 1202 aaKnown RBP12.88□□□□□ -0.35
VPS28-214ENST00000531032 ODR4Q5SWX8 454 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 SMAP1Q8IYB5 467 aaPredicted RBP12.88□□□□□ -0.35
VPS28-214ENST00000531032 KLHL23Q8NBE8 558 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 LENG9Q96B70 501 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 JAKMIP1Q96N16 626 aaKnown RBP12.88□□□□□ -0.35
VPS28-214ENST00000531032 C1orf112Q9NSG2 853 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 LRFN2Q9ULH4 789 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 GINS2Q9Y248 185 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 SNX14Q9Y5W7 946 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 PLXNA4Q9HCM2 1894 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 WDR81Q562E7 1941 aa12.88□□□□□ -0.35
VPS28-214ENST00000531032 C9IYK1 514 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 GPR182O15218 404 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 MBTPS2O43462 519 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 DCXO43602 365 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 GPR32O75388 356 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 CSPG5O95196 566 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 PSAPP07602 524 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 RPS6KB1P23443 525 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 CRYBB1P53674 252 aaPredicted RBP12.87□□□□□ -0.35
VPS28-214ENST00000531032 ADAM15Q13444 863 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 SMAD4Q13485 552 aaKnown RBP12.87□□□□□ -0.35
VPS28-214ENST00000531032 NTRK3Q16288 839 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 PRR16Q569H4 304 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 BLOC1S2Q6QNY1 142 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 SLC24A5Q71RS6 500 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 CKAP2LQ8IYA6 745 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 POF1BQ8WVV4 589 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 PHKBQ93100 1093 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 PPP2R3CQ969Q6 453 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 UIMC1Q96RL1 719 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 ADAM2Q99965 735 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 RNF26Q9BY78 433 aaPredicted RBP12.87□□□□□ -0.35
VPS28-214ENST00000531032 RGS18Q9NS28 235 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 RNF216Q9NWF9 866 aaPredicted RBP12.87□□□□□ -0.35
VPS28-214ENST00000531032 ST3GAL5Q9UNP4 418 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 PCDHB7Q9Y5E2 793 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 PCDHA10Q9Y5I2 948 aa12.87□□□□□ -0.35
VPS28-214ENST00000531032 DENND3A2RUS2 1198 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 LINC01565O15544 149 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 IRS1P35568 1242 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 EVCP57679 992 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 CLUL1Q15846 466 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 KIZQ2M2Z5 673 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 ADGRD2Q7Z7M1 963 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 FAM228AQ86W67 206 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 EFHBQ8N7U6 833 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 CCDC148Q8NFR7 591 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 BICD2Q8TD16 824 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 RASGRP4Q8TDF6 673 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 MSLNLQ96KJ4 702 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms