RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 BRMS1Q9HCU9 246 aa15.03■□□□□ -0
VPS28-211ENST00000530790 PRDM6Q9NQX0 595 aa15.03■□□□□ -0
VPS28-211ENST00000530790 DDX25Q9UHL0 483 aaKnown RBP15.03■□□□□ -0
VPS28-211ENST00000530790 MTCH2Q9Y6C9 303 aa15.03■□□□□ -0
VPS28-211ENST00000530790 PSMD10O75832 226 aa15.02■□□□□ -0
VPS28-211ENST00000530790 SEC24BO95487 1268 aa15.02■□□□□ -0
VPS28-211ENST00000530790 OATP04181 439 aa15.02■□□□□ -0
VPS28-211ENST00000530790 SKIV2LQ15477 1246 aaKnown RBP15.02■□□□□ -0
VPS28-211ENST00000530790 LETM2Q2VYF4 491 aa15.02■□□□□ -0
VPS28-211ENST00000530790 MIER3Q7Z3K6 550 aa15.02■□□□□ -0
VPS28-211ENST00000530790 NEK8Q86SG6 692 aa15.02■□□□□ -0
VPS28-211ENST00000530790 FBXO22Q8NEZ5 403 aa15.02■□□□□ -0
VPS28-211ENST00000530790 RDM1Q8NG50 284 aa15.02■□□□□ -0
VPS28-211ENST00000530790 ETNPPLQ8TBG4 499 aa15.02■□□□□ -0
VPS28-211ENST00000530790 GJA10Q969M2 543 aa15.02■□□□□ -0
VPS28-211ENST00000530790 MBOAT7Q96N66 472 aa15.02■□□□□ -0
VPS28-211ENST00000530790 COL25A1Q9BXS0 654 aaPredicted RBP15.02■□□□□ -0
VPS28-211ENST00000530790 AGO3Q9H9G7 860 aaKnown RBP15.02■□□□□ -0
VPS28-211ENST00000530790 GINS2Q9Y248 185 aa15.02■□□□□ -0
VPS28-211ENST00000530790 LPXNO60711 386 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 DTNBO60941 627 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 GCFC2P16383 781 aaKnown RBP15.01□□□□□ -0.01
VPS28-211ENST00000530790 UGCGQ16739 394 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 TJAP1Q5JTD0 557 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 KRT40Q6A162 431 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 PIK3AP1Q6ZUJ8 805 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 KIAA0319LQ8IZA0 1049 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 METTL13Q8N6R0 699 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 SAMD11Q96NU1 681 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 MAP7D2Q96T17 732 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 NAP1L4Q99733 375 aaKnown RBP15.01□□□□□ -0.01
VPS28-211ENST00000530790 C17orf80Q9BSJ5 609 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 GJB4Q9NTQ9 266 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 PADI3Q9ULW8 664 aa15.01□□□□□ -0.01
VPS28-211ENST00000530790 ADGRA3Q8IWK6 1321 aa15□□□□□ -0.01
VPS28-211ENST00000530790 MAGEB2O15479 319 aa15□□□□□ -0.01
VPS28-211ENST00000530790 SLC37A4O43826 429 aa15□□□□□ -0.01
VPS28-211ENST00000530790 ZNF862O60290 1169 aa15□□□□□ -0.01
VPS28-211ENST00000530790 KRT2P35908 639 aa15□□□□□ -0.01
VPS28-211ENST00000530790 NSUN7Q8NE18 718 aaKnown RBP15□□□□□ -0.01
VPS28-211ENST00000530790 OXER1Q8TDS5 423 aa15□□□□□ -0.01
VPS28-211ENST00000530790 ATXN2LQ8WWM7 1075 aaKnown RBP15□□□□□ -0.01
VPS28-211ENST00000530790 LINC01599Q8WXQ3 324 aa15□□□□□ -0.01
VPS28-211ENST00000530790 PPP1R16BQ96T49 567 aa15□□□□□ -0.01
VPS28-211ENST00000530790 SUGCTQ9HAC7 445 aa15□□□□□ -0.01
VPS28-211ENST00000530790 NRBP2Q9NSY0 501 aa15□□□□□ -0.01
VPS28-211ENST00000530790 ENPP3O14638 875 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 CCNT1O60563 726 aaKnown RBP14.99□□□□□ -0.01
VPS28-211ENST00000530790 RPS6KA5O75582 802 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 VTNP04004 478 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 FDPSP14324 419 aaKnown RBP14.99□□□□□ -0.01
VPS28-211ENST00000530790 TMOD1P28289 359 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 CLCN3P51790 818 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 TRIM29Q14134 588 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 KIZQ2M2Z5 673 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 TMEM266Q2M3C6 531 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 EPC2Q52LR7 807 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 ODR4Q5SWX8 454 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 PPP4R3AQ6IN85 833 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 NPAS4Q8IUM7 802 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 IL27Q8NEV9 243 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 SYMPKQ92797 1274 aaKnown RBP14.99□□□□□ -0.01
VPS28-211ENST00000530790 OSMRQ99650 979 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 LMCD1Q9NZU5 365 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 SEPT9Q9UHD8 586 aaPredicted RBP14.99□□□□□ -0.01
VPS28-211ENST00000530790 AKT3Q9Y243 479 aa14.99□□□□□ -0.01
VPS28-211ENST00000530790 JAK2O60674 1132 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 STAG3L1P0CL83 205 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 CRYBB1P53674 252 aaPredicted RBP14.98□□□□□ -0.01
VPS28-211ENST00000530790 MRPS5P82675 430 aaKnown RBP14.98□□□□□ -0.01
VPS28-211ENST00000530790 TBC1D8BQ0IIM8 1120 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 NFX1Q12986 1120 aaKnown RBP14.98□□□□□ -0.01
VPS28-211ENST00000530790 C8orf34Q49A92 452 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 B3GNT9Q6UX72 402 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 FAM43BQ6ZT52 329 aaPredicted RBP14.98□□□□□ -0.01
VPS28-211ENST00000530790 TMEM192Q8IY95 271 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 LRRC71Q8N4P6 559 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 FIBCD1Q8N539 461 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 TMEM40Q8WWA1 233 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 FAM20AQ96MK3 541 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 RC3H2Q9HBD1 1191 aaKnown RBP14.98□□□□□ -0.01
VPS28-211ENST00000530790 ERVK-5Q9HDB9 667 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 KCNMB3Q9NPA1 279 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 RWDD3Q9Y3V2 267 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 VCANP13611 3396 aa14.98□□□□□ -0.01
VPS28-211ENST00000530790 MYO9BQ13459 2157 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 DENND3A2RUS2 1198 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 TBX3O15119 743 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 GPR182O15218 404 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 MARCH6O60337 910 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 MMP1P03956 469 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 CTNNB1P35222 781 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 FOSBP53539 338 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 NR5A1Q13285 461 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 PPP2R5CQ13362 524 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 BTG3Q14201 252 aaPredicted RBP14.97□□□□□ -0.01
VPS28-211ENST00000530790 MTERF2Q49AM1 385 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 XKR3Q5GH77 459 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 EFCAB12Q6NXP0 572 aa14.97□□□□□ -0.01
VPS28-211ENST00000530790 ZNF710Q8N1W2 664 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms