RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TGFB1I1O43294 461 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 TUBB4AP04350 444 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 TRIM21P19474 475 aaKnown RBP22.82■■□□□ 1.24
VPS28-209ENST00000528142 ODR4Q5SWX8 454 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 GPAT2Q6NUI2 795 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 CYP26C1Q6V0L0 522 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 FASTKD5Q7L8L6 764 aaKnown RBP22.82■■□□□ 1.24
VPS28-209ENST00000528142 DESI2Q9BSY9 194 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 ANKEF1Q9NU02 776 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 ADGRG1Q9Y653 693 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 DCAF8L1A6NGE4 600 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 EIF3JO75822 258 aaKnown RBP22.82■■□□□ 1.24
VPS28-209ENST00000528142 ERCC3P19447 782 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 ICAM3P32942 547 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 GJA5P36382 358 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 ZBED6P86452 979 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 FSTL1Q12841 308 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 STXBP2Q15833 593 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 GNPTABQ3T906 1256 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 ZC2HC1CQ53FD0 456 aaPredicted RBP22.82■■□□□ 1.24
VPS28-209ENST00000528142 FAM178BQ8IXR5 827 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 SMAP1Q8IYB5 467 aaPredicted RBP22.82■■□□□ 1.24
VPS28-209ENST00000528142 UBE4BO95155 1302 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 ZMYM2Q9UBW7 1377 aa22.82■■□□□ 1.24
VPS28-209ENST00000528142 LCTP09848 1927 aa22.81■■□□□ 1.24
VPS28-209ENST00000528142 ITGBL1O95965 494 aaPredicted RBP22.81■■□□□ 1.24
VPS28-209ENST00000528142 ALDH5A1P51649 535 aaPredicted RBP22.81■■□□□ 1.24
VPS28-209ENST00000528142 NFIL3Q16649 462 aa22.81■■□□□ 1.24
VPS28-209ENST00000528142 TRIM65Q6PJ69 517 aa22.81■■□□□ 1.24
VPS28-209ENST00000528142 NCAPG2Q86XI2 1143 aa22.81■■□□□ 1.24
VPS28-209ENST00000528142 PCMTD1Q96MG8 357 aaPredicted RBP22.81■■□□□ 1.24
VPS28-209ENST00000528142 RBPJLQ9UBG7 517 aa22.81■■□□□ 1.24
VPS28-209ENST00000528142 TMEM150BA6NC51 233 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 GOLGA6L9A6NEM1 432 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 BACH1O14867 736 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 PPP1R37O75864 691 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 NR3C1P04150 777 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 MEA1Q16626 185 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 WDR59Q6PJI9 974 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.8■■□□□ 1.24
VPS28-209ENST00000528142 FRMD5Q7Z6J6 570 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 ZNF592Q92610 1267 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 PAGR1Q9BTK6 254 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 JPH1Q9HDC5 661 aaPredicted RBP22.8■■□□□ 1.24
VPS28-209ENST00000528142 TXNRD2Q9NNW7 524 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 FAM184BQ9ULE4 1060 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 TELO2Q9Y4R8 837 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 SOWAHBA6NEL2 793 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 STBD1O95210 358 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 CCDC175P0C221 793 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 EDNRBP24530 442 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 RPL13P26373 211 aaKnown RBP22.8■■□□□ 1.24
VPS28-209ENST00000528142 KCNMA1Q12791 1236 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 STXBP4Q6ZWJ1 553 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 CHP1Q99653 195 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 TIPINQ9BVW5 301 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 R3HDMLQ9H3Y0 253 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 SLC9A2Q9UBY0 812 aa22.8■■□□□ 1.24
VPS28-209ENST00000528142 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.8■■□□□ 1.24
VPS28-209ENST00000528142 LOXHD1Q8IVV2 1947 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 UQCRHLA0A096LP55 91 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 RIOK3O14730 519 aaKnown RBP22.79■■□□□ 1.24
VPS28-209ENST00000528142 EPHB6O15197 1021 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 SLC25A27O95847 323 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 UQCRHP07919 91 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 MAPTP10636 758 aaKnown RBP22.79■■□□□ 1.24
VPS28-209ENST00000528142 ETF1P62495 437 aaKnown RBP22.79■■□□□ 1.24
VPS28-209ENST00000528142 SP2Q02086 613 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 UTP14CQ5TAP6 766 aaKnown RBP22.79■■□□□ 1.24
VPS28-209ENST00000528142 ANO5Q75V66 913 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 CCDC155Q8N6L0 562 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 FAM133AQ8N9E0 248 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 KIF18AQ8NI77 898 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 PCDHB13Q9Y5F0 798 aa22.79■■□□□ 1.24
VPS28-209ENST00000528142 UNCXA6NJT0 531 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 POTEB2H3BUK9 544 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 SLC16A3O15427 465 aaKnown RBP22.78■■□□□ 1.24
VPS28-209ENST00000528142 ZNF862O60290 1169 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 USO1O60763 962 aaKnown RBP22.78■■□□□ 1.24
VPS28-209ENST00000528142 AKAP3O75969 853 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 PSAPP07602 524 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 OSBPP22059 807 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 CST9Q5W186 159 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 ABHD15Q6UXT9 468 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 MAEAQ7L5Y9 396 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 KSR1Q8IVT5 923 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 SH2D3AQ9BRG2 576 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 IKZF4Q9H2S9 585 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 LARSQ9P2J5 1176 aaKnown RBP22.78■■□□□ 1.24
VPS28-209ENST00000528142 GABBR1Q9UBS5 961 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 PLS3P13797 630 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 GTF2F1P35269 517 aaKnown RBP eCLIP22.78■■□□□ 1.24
VPS28-209ENST00000528142 NPEPPSP55786 919 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 ACTR2P61160 394 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 Q3C1V9 767 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 PLA2G4FQ68DD2 849 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 SYT10Q6XYQ8 523 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 SMCR8Q8TEV9 937 aaPredicted RBP22.78■■□□□ 1.24
VPS28-209ENST00000528142 ATP6V0A1Q93050 837 aa22.78■■□□□ 1.24
VPS28-209ENST00000528142 MMRN2Q9H8L6 949 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms