RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DRP2Q13474 957 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 LETM2Q2VYF4 491 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 LRCH2Q5VUJ6 765 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 PPP2R2DQ66LE6 453 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 PPP4R3AQ6IN85 833 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 TRMT1LQ7Z2T5 733 aaKnown RBP12.05□□□□□ -0.48
CD44-227ENST00000528086 CCDC83Q8IWF9 413 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 SMAP1Q8IYB5 467 aaPredicted RBP12.05□□□□□ -0.48
CD44-227ENST00000528086 SP7Q8TDD2 431 aaPredicted RBP12.05□□□□□ -0.48
CD44-227ENST00000528086 TOP1MTQ969P6 601 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 IFIH1Q9BYX4 1025 aaKnown RBP12.05□□□□□ -0.48
CD44-227ENST00000528086 C22orf23Q9BZE7 217 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 SLC28A3Q9HAS3 691 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 DDX25Q9UHL0 483 aaKnown RBP12.05□□□□□ -0.48
CD44-227ENST00000528086 LIMCH1Q9UPQ0 1083 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 KDM3AQ9Y4C1 1321 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 COL1A2P08123 1366 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 ARID2Q68CP9 1835 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 ENPP3O14638 875 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 TLL1O43897 1013 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 MGEA5O60502 916 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 GAS7O60861 476 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 PSAPP07602 524 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 KCNJ6P48051 423 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 GUCY1B3Q02153 619 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 PRKCEQ02156 737 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 ZNF484Q5JVG2 852 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 FAM160B1Q5W0V3 765 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 NEK8Q86SG6 692 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 ZNF579Q8NAF0 562 aaKnown RBP12.04□□□□□ -0.48
CD44-227ENST00000528086 BBXQ8WY36 941 aaPredicted RBP12.04□□□□□ -0.48
CD44-227ENST00000528086 SEPT8Q92599 483 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 SH2D3AQ9BRG2 576 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 TEKT3Q9BXF9 490 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 CELF4Q9BZC1 486 aaKnown RBP12.04□□□□□ -0.48
CD44-227ENST00000528086 TRPV2Q9Y5S1 764 aa12.04□□□□□ -0.48
CD44-227ENST00000528086 FNDC1Q4ZHG4 1894 aaPredicted RBP12.04□□□□□ -0.48
CD44-227ENST00000528086 CCDC194A0A1B0GVG4 234 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 KIF28PB7ZC32 967 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 ZBTB39O15060 712 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 OATP04181 439 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 POU3F3P20264 500 aaPredicted RBP12.03□□□□□ -0.48
CD44-227ENST00000528086 CLCN3P51790 818 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 PPP2R5CQ13362 524 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 TMEM266Q2M3C6 531 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 TSHZ1Q6ZSZ6 1077 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 ANO5Q75V66 913 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 DIS3L2Q8IYB7 885 aaKnown RBP12.03□□□□□ -0.48
CD44-227ENST00000528086 MYOCDQ8IZQ8 938 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 LRRC71Q8N4P6 559 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 PPP1R16BQ96T49 567 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 RAD9AQ99638 391 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 TMEM60Q9H2L4 133 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 ADAMTS10Q9H324 1103 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 SUGCTQ9HAC7 445 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 ERVK-5Q9HDB9 667 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 PADI3Q9ULW8 664 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 NOC2LQ9Y3T9 749 aaKnown RBP12.03□□□□□ -0.48
CD44-227ENST00000528086 MTCH2Q9Y6C9 303 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 MUC3AQ02505 3323 aa12.03□□□□□ -0.48
CD44-227ENST00000528086 CUL9Q8IWT3 2517 aa12.02□□□□□ -0.48
CD44-227ENST00000528086 RALGAPA2Q2PPJ7 1873 aa12.02□□□□□ -0.48
CD44-227ENST00000528086 IGKV6-21A0A0C4DH24 114 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 CCNT1O60563 726 aaKnown RBP12.02□□□□□ -0.49
CD44-227ENST00000528086 EFCAB14O75071 495 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 VTNP04004 478 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 SFNP31947 248 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 KRT2P35908 639 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 ERVK-21P61565 698 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 GRB10Q13322 594 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 MIER3Q7Z3K6 550 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 BANK1Q8NDB2 785 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 SLC17A8Q8NDX2 589 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 RDM1Q8NG50 284 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 ARNTL2Q8WYA1 636 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 ZNF668Q96K58 619 aaPredicted RBP12.02□□□□□ -0.49
CD44-227ENST00000528086 MTMR9Q96QG7 549 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 C17orf80Q9BSJ5 609 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 NIFKQ9BYG3 293 aaKnown RBP12.02□□□□□ -0.49
CD44-227ENST00000528086 RGL1Q9NZL6 768 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 SQORQ9Y6N5 450 aa12.02□□□□□ -0.49
CD44-227ENST00000528086 UPP2O95045 317 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 GATMP50440 423 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 JAK3P52333 1124 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 DSC3Q14574 896 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 KIZQ2M2Z5 673 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 PLA2G4FQ68DD2 849 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 FAM228AQ86W67 206 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 NME8Q8N427 588 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 APBB2Q92870 758 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 ZNF689Q96CS4 500 aaPredicted RBP12.01□□□□□ -0.49
CD44-227ENST00000528086 FAM20AQ96MK3 541 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 TBC1D32Q96NH3 1257 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 TSPYL2Q9H2G4 693 aaPredicted RBP12.01□□□□□ -0.49
CD44-227ENST00000528086 SAMM50Q9Y512 469 aa12.01□□□□□ -0.49
CD44-227ENST00000528086 TTC28Q96AY4 2481 aa12□□□□□ -0.49
CD44-227ENST00000528086 TBX3O15119 743 aa12□□□□□ -0.49
CD44-227ENST00000528086 AMHP03971 560 aa12□□□□□ -0.49
CD44-227ENST00000528086 GCFC2P16383 781 aaKnown RBP12□□□□□ -0.49
CD44-227ENST00000528086 NPEPPSP55786 919 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms