RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TMOD1P28289 359 aa23.22■■□□□ 1.31
VPS28-206ENST00000526734 ST3GAL1Q11201 340 aa23.22■■□□□ 1.31
VPS28-206ENST00000526734 PPP2R5CQ13362 524 aa23.22■■□□□ 1.31
VPS28-206ENST00000526734 KRT40Q6A162 431 aa23.22■■□□□ 1.31
VPS28-206ENST00000526734 DIS3L2Q8IYB7 885 aaKnown RBP23.22■■□□□ 1.31
VPS28-206ENST00000526734 KIAA0319LQ8IZA0 1049 aa23.22■■□□□ 1.31
VPS28-206ENST00000526734 OSBPL7Q9BZF2 842 aa23.22■■□□□ 1.31
VPS28-206ENST00000526734 ZNF862O60290 1169 aa23.21■■□□□ 1.31
VPS28-206ENST00000526734 NR5A1Q13285 461 aa23.21■■□□□ 1.31
VPS28-206ENST00000526734 SAFBQ15424 915 aaKnown RBP eCLIP23.21■■□□□ 1.31
VPS28-206ENST00000526734 XKR3Q5GH77 459 aa23.21■■□□□ 1.31
VPS28-206ENST00000526734 TMCO2Q7Z6W1 182 aaPredicted RBP23.21■■□□□ 1.31
VPS28-206ENST00000526734 CCDC83Q8IWF9 413 aa23.21■■□□□ 1.31
VPS28-206ENST00000526734 SLFN12Q8IYM2 578 aa23.21■■□□□ 1.31
VPS28-206ENST00000526734 SP7Q8TDD2 431 aaPredicted RBP23.21■■□□□ 1.31
VPS28-206ENST00000526734 TGS1Q96RS0 853 aaKnown RBP23.21■■□□□ 1.31
VPS28-206ENST00000526734 MAP7D2Q96T17 732 aa23.21■■□□□ 1.31
VPS28-206ENST00000526734 PTPRSQ13332 1948 aa23.21■■□□□ 1.31
VPS28-206ENST00000526734 ST18O60284 1047 aa23.2■■□□□ 1.3
VPS28-206ENST00000526734 MARCH6O60337 910 aa23.2■■□□□ 1.3
VPS28-206ENST00000526734 BAG4O95429 457 aaKnown RBP23.2■■□□□ 1.3
VPS28-206ENST00000526734 POU3F3P20264 500 aaPredicted RBP23.2■■□□□ 1.3
VPS28-206ENST00000526734 PAK2Q13177 524 aa23.2■■□□□ 1.3
VPS28-206ENST00000526734 ADGRE1Q14246 886 aa23.2■■□□□ 1.3
VPS28-206ENST00000526734 SAMD11Q96NU1 681 aa23.2■■□□□ 1.3
VPS28-206ENST00000526734 YME1L1Q96TA2 773 aa23.2■■□□□ 1.3
VPS28-206ENST00000526734 LCHNA4D1U4 455 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 LINC01553A4QN01 128 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 GTPBP6O43824 516 aaPredicted RBP23.19■■□□□ 1.3
VPS28-206ENST00000526734 IGFBP4P22692 258 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 CD52P31358 61 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 ERVK-21P61565 698 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 PSMC5P62195 406 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 TMEM62Q0P6H9 643 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 UGCGQ16739 394 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 FAM117BQ6P1L5 589 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.19■■□□□ 1.3
VPS28-206ENST00000526734 ARNTL2Q8WYA1 636 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 GJA10Q969M2 543 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 NIFKQ9BYG3 293 aaKnown RBP23.19■■□□□ 1.3
VPS28-206ENST00000526734 AGO3Q9H9G7 860 aaKnown RBP23.19■■□□□ 1.3
VPS28-206ENST00000526734 VAV3Q9UKW4 847 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 MYH9P35579 1960 aaKnown RBP23.19■■□□□ 1.3
VPS28-206ENST00000526734 SIP14410 1827 aa23.19■■□□□ 1.3
VPS28-206ENST00000526734 CHD9Q3L8U1 2897 aa23.18■■□□□ 1.3
VPS28-206ENST00000526734 BTBD18B2RXH4 712 aa23.18■■□□□ 1.3
VPS28-206ENST00000526734 DTNBO60941 627 aa23.18■■□□□ 1.3
VPS28-206ENST00000526734 ARHGEF15O94989 841 aa23.18■■□□□ 1.3
VPS28-206ENST00000526734 CRYBB1P53674 252 aaPredicted RBP23.18■■□□□ 1.3
VPS28-206ENST00000526734 EARS2Q5JPH6 523 aaKnown RBP23.18■■□□□ 1.3
VPS28-206ENST00000526734 METTL13Q8N6R0 699 aa23.18■■□□□ 1.3
VPS28-206ENST00000526734 C8orf76Q96K31 380 aa23.18■■□□□ 1.3
VPS28-206ENST00000526734 RNF216Q9NWF9 866 aaPredicted RBP23.18■■□□□ 1.3
VPS28-206ENST00000526734 PADI3Q9ULW8 664 aa23.18■■□□□ 1.3
VPS28-206ENST00000526734 PPME1Q9Y570 386 aa23.18■■□□□ 1.3
VPS28-206ENST00000526734 ENPP3O14638 875 aa23.17■■□□□ 1.3
VPS28-206ENST00000526734 TBC1D8BQ0IIM8 1120 aa23.17■■□□□ 1.3
VPS28-206ENST00000526734 TARBP2Q15633 366 aaKnown RBP23.17■■□□□ 1.3
VPS28-206ENST00000526734 TRMT1LQ7Z2T5 733 aaKnown RBP23.17■■□□□ 1.3
VPS28-206ENST00000526734 LINC01465Q8N7H1 131 aa23.17■■□□□ 1.3
VPS28-206ENST00000526734 HAS1Q92839 578 aa23.17■■□□□ 1.3
VPS28-206ENST00000526734 JPH2Q9BR39 696 aaPredicted RBP23.17■■□□□ 1.3
VPS28-206ENST00000526734 SEPT9Q9UHD8 586 aaPredicted RBP23.17■■□□□ 1.3
VPS28-206ENST00000526734 COL6A3P12111 3177 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 GPR182O15218 404 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 RPS6KA5O75582 802 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 P4HBP07237 508 aaKnown RBP23.16■■□□□ 1.3
VPS28-206ENST00000526734 QARSP47897 775 aaKnown RBP23.16■■□□□ 1.3
VPS28-206ENST00000526734 CDC42EP1Q00587 391 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 EPHA7Q15375 998 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 EFCAB12Q6NXP0 572 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 POTEDQ86YR6 584 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 FAM184AQ8NB25 1140 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 TSPYL2Q9H2G4 693 aaPredicted RBP23.16■■□□□ 1.3
VPS28-206ENST00000526734 CERS4Q9HA82 394 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 LMCD1Q9NZU5 365 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 KIF3AQ9Y496 699 aa23.16■■□□□ 1.3
VPS28-206ENST00000526734 FAM205CA6NFA0 338 aa23.15■■□□□ 1.3
VPS28-206ENST00000526734 UPP2O95045 317 aa23.15■■□□□ 1.3
VPS28-206ENST00000526734 STAG3L1P0CL83 205 aa23.15■■□□□ 1.3
VPS28-206ENST00000526734 ORC2Q13416 577 aaPredicted RBP23.15■■□□□ 1.3
VPS28-206ENST00000526734 NPAS4Q8IUM7 802 aa23.15■■□□□ 1.3
VPS28-206ENST00000526734 EXOC8Q8IYI6 725 aa23.15■■□□□ 1.3
VPS28-206ENST00000526734 FOXP1Q9H334 677 aaPredicted RBP23.15■■□□□ 1.3
VPS28-206ENST00000526734 ERVK-5Q9HDB9 667 aa23.15■■□□□ 1.3
VPS28-206ENST00000526734 AKT3Q9Y243 479 aa23.15■■□□□ 1.3
VPS28-206ENST00000526734 GINS2Q9Y248 185 aa23.15■■□□□ 1.3
VPS28-206ENST00000526734 NEMFO60524 1076 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 MCM2P49736 904 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 DNM2P50570 870 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 CLCN3P51790 818 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 FOSBP53539 338 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 CALCRLQ16602 461 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 KIZQ2M2Z5 673 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 C1orf112Q9NSG2 853 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 RWDD3Q9Y3V2 267 aa23.14■■□□□ 1.29
VPS28-206ENST00000526734 EPOPA6NHQ4 379 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 EML1O00423 815 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 GPR32O75388 356 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 STBD1O95210 358 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms