RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MYCLP1P12525 358 aaPredicted RBP6.75□□□□□ -1.33
CD44-223ENST00000526553 CSF2RBP32927 897 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 EPHA7Q15375 998 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 SEPT7Q16181 437 aaKnown RBP6.75□□□□□ -1.33
CD44-223ENST00000526553 UBXN11Q5T124 520 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 LILRA6Q6PI73 481 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 NME9Q86XW9 330 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 EFHBQ8N7U6 833 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 WDR48Q8TAF3 677 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 C16orf92Q96LL3 132 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 IFT57Q9NWB7 429 aa6.75□□□□□ -1.33
CD44-223ENST00000526553 PRICKLE3O43900 615 aaPredicted RBP6.74□□□□□ -1.33
CD44-223ENST00000526553 PRLP01236 227 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 ETV4P43268 484 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 SURF1Q15526 300 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 SKOR2Q2VWA4 1001 aaPredicted RBP6.74□□□□□ -1.33
CD44-223ENST00000526553 LCE4AQ5TA78 99 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 ERICH6BQ5W0A0 696 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 RALYLQ86SE5 291 aaKnown RBP6.74□□□□□ -1.33
CD44-223ENST00000526553 THNSL2Q86YJ6 484 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 KBTBD2Q8IY47 623 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 NXPE1Q8N323 547 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 SMC1BQ8NDV3 1235 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 OR2W6PQ8NHA6 318 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 ERCC4Q92889 916 aaPredicted RBP6.74□□□□□ -1.33
CD44-223ENST00000526553 ELF4Q99607 663 aaPredicted RBP6.74□□□□□ -1.33
CD44-223ENST00000526553 ZDHHC5Q9C0B5 715 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.74□□□□□ -1.33
CD44-223ENST00000526553 INVSQ9Y283 1065 aa6.74□□□□□ -1.33
CD44-223ENST00000526553 UBA6A0AVT1 1052 aaPredicted RBP6.73□□□□□ -1.33
CD44-223ENST00000526553 CLSTN1O94985 981 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 SLC9A1P19634 815 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 APEX1P27695 318 aaKnown RBP6.73□□□□□ -1.33
CD44-223ENST00000526553 SCNN1BP51168 640 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 OCRLQ01968 901 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 ADCY1Q08828 1119 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 TMEM200BQ69YZ2 307 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 FERMT3Q86UX7 667 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 ZZZ3Q8IYH5 903 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 IFNL2Q8IZJ0 200 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 CHTF18Q8WVB6 975 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 RELTQ969Z4 430 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 CARD11Q9BXL7 1154 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 H2AFY2Q9P0M6 372 aaPredicted RBP6.73□□□□□ -1.33
CD44-223ENST00000526553 ZDHHC9Q9Y397 364 aa6.73□□□□□ -1.33
CD44-223ENST00000526553 PLATP00750 562 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 PTX3P26022 381 aaPredicted RBP6.72□□□□□ -1.33
CD44-223ENST00000526553 CD83Q01151 205 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 ROM1Q03395 351 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 USP10Q14694 798 aaKnown RBP6.72□□□□□ -1.33
CD44-223ENST00000526553 SART3Q15020 963 aaKnown RBP6.72□□□□□ -1.33
CD44-223ENST00000526553 TTC38Q5R3I4 469 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 GRAMD4Q6IC98 578 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 ESRP1Q6NXG1 681 aaKnown RBP6.72□□□□□ -1.33
CD44-223ENST00000526553 RNF180Q86T96 592 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 PASD1Q8IV76 773 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 MAML3Q96JK9 1138 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 SCYL1Q96KG9 808 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 TOMM22Q9NS69 142 aa6.72□□□□□ -1.33
CD44-223ENST00000526553 THG1LQ9NWX6 298 aaKnown RBP6.72□□□□□ -1.33
CD44-223ENST00000526553 KRTAP4-8A0A0G2JLE6 195 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 A0A0G2JNJ9 132 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 LAMTOR5O43504 91 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 SYN1P17600 705 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 ADCY8P40145 1251 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 STAT3P40763 770 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 LSSP48449 732 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 KPNA1P52294 538 aaPredicted RBP6.71□□□□□ -1.34
CD44-223ENST00000526553 MAP3K12Q12852 859 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 MOGSQ13724 837 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 EIF4HQ15056 248 aaKnown RBP6.71□□□□□ -1.34
CD44-223ENST00000526553 DHCR24Q15392 516 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 OTOP2Q7RTS6 562 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 LEO1Q8WVC0 666 aaPredicted RBP6.71□□□□□ -1.34
CD44-223ENST00000526553 ZMAT4Q9H898 229 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 Q9UFV3 132 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 CNOT11Q9UKZ1 510 aaKnown RBP6.71□□□□□ -1.34
CD44-223ENST00000526553 SLC4A7Q9Y6M7 1214 aa6.71□□□□□ -1.34
CD44-223ENST00000526553 FOXD2O60548 495 aaPredicted RBP6.7□□□□□ -1.34
CD44-223ENST00000526553 HMGCRP04035 888 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 ZNF888P0CJ79 500 aaPredicted RBP6.7□□□□□ -1.34
CD44-223ENST00000526553 EPHB4P54760 987 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 SLC6A3Q01959 620 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 LRRC32Q14392 662 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 ZNF827Q17R98 1081 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 TBC1D10BQ4KMP7 808 aaPredicted RBP6.7□□□□□ -1.34
CD44-223ENST00000526553 GPR158Q5T848 1215 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 EGFLAMQ63HQ2 1017 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 SLFN12LQ6IEE8 588 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 GPR155Q7Z3F1 870 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 PHYKPLQ8IUZ5 450 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 TMX1Q9H3N1 280 aa6.7□□□□□ -1.34
CD44-223ENST00000526553 TGM5O43548 720 aa6.69□□□□□ -1.34
CD44-223ENST00000526553 CD40P25942 277 aa6.69□□□□□ -1.34
CD44-223ENST00000526553 SOX5P35711 763 aa6.69□□□□□ -1.34
CD44-223ENST00000526553 ADCYAP1R1P41586 468 aa6.69□□□□□ -1.34
CD44-223ENST00000526553 MASP1P48740 699 aa6.69□□□□□ -1.34
CD44-223ENST00000526553 RGS3P49796 1198 aa6.69□□□□□ -1.34
CD44-223ENST00000526553 KCNQ1P51787 676 aa6.69□□□□□ -1.34
CD44-223ENST00000526553 IL2P60568 153 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms