RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 PADI4Q9UM07 663 aa6.39□□□□□ -1.39
USP47-204ENST00000525078 MINPP1Q9UNW1 487 aa6.39□□□□□ -1.39
USP47-204ENST00000525078 COL17A1Q9UMD9 1497 aaPredicted RBP6.39□□□□□ -1.39
USP47-204ENST00000525078 POM121BA6NF01 834 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 EYA2O00167 538 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 PPFIA3O75145 1194 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 LRRN2O75325 713 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 PRAMEF1O95521 474 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 ZBTB48P10074 688 aaPredicted RBP6.38□□□□□ -1.39
USP47-204ENST00000525078 MTHFD2P13995 350 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 IFNGR1P15260 489 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 PTX3P26022 381 aaPredicted RBP6.38□□□□□ -1.39
USP47-204ENST00000525078 RXRBP28702 533 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 TPP2P29144 1249 aaPredicted RBP6.38□□□□□ -1.39
USP47-204ENST00000525078 ELF1P32519 619 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 CD68P34810 354 aaPredicted RBP6.38□□□□□ -1.39
USP47-204ENST00000525078 AGFG1P52594 562 aaKnown RBP6.38□□□□□ -1.39
USP47-204ENST00000525078 JAM2P57087 298 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 GRM1Q13255 1194 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 PRKG1Q13976 671 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 CRTC3Q6UUV7 619 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 MAEAQ7L5Y9 396 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 LIX1LQ8IVB5 337 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 MAP4K3Q8IVH8 894 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 COLGALT2Q8IYK4 626 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 SMYD4Q8IYR2 804 aaPredicted RBP6.38□□□□□ -1.39
USP47-204ENST00000525078 MSL3Q8N5Y2 521 aaKnown RBP6.38□□□□□ -1.39
USP47-204ENST00000525078 GALNT11Q8NCW6 608 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 TRAPPC12Q8WVT3 735 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 TMEM41AQ96HV5 264 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 TTC14Q96N46 770 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 ANO3Q9BYT9 981 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 TRIT1Q9H3H1 467 aaKnown RBP6.38□□□□□ -1.39
USP47-204ENST00000525078 ZMAT4Q9H898 229 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 VPS45Q9NRW7 570 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 FRMD4BQ9Y2L6 1034 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 TTLL3Q9Y4R7 772 aa6.38□□□□□ -1.39
USP47-204ENST00000525078 ELOA3CA0A087WX78 387 aaPredicted RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 NPHP3-ACAD11A0A0J9YXS1 232 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 ELOA3DA6NLF2 546 aaPredicted RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 FAM155AB1AL88 458 aaPredicted RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 ZNF561-AS1K7EIQ3 104 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 DVL2O14641 736 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 FFAR2O15552 330 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 TMCC2O75069 709 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 ADAM11O75078 769 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 SKAP2O75563 359 aaPredicted RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 GFPT2O94808 682 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 RPN1P04843 607 aaKnown RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 CYP17A1P05093 508 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 CLEC2LP0C7M8 214 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 MYF5P13349 255 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 ASPAP45381 313 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.37□□□□□ -1.39
USP47-204ENST00000525078 ELOA3BQ3SY89 546 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 PAN2Q504Q3 1202 aaKnown RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 NUTM2GQ5VZR2 741 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 ITPRIPL1Q6GPH6 555 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 SWSAP1Q6NVH7 229 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 VWA5B2Q8N398 1253 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 ELOA3Q8NG57 546 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 ZSCAN18Q8TBC5 510 aaPredicted RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 RIN2Q8WYP3 895 aaPredicted RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 EAF2Q96CJ1 260 aaPredicted RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 NUDT16L1Q9BRJ7 211 aaKnown RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 BTBD1Q9H0C5 482 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 CYP4F12Q9HCS2 524 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 DCP1AQ9NPI6 582 aaPredicted RBP6.37□□□□□ -1.39
USP47-204ENST00000525078 KMT5AQ9NQR1 393 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 ACSS2Q9NR19 701 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 CCDC39Q9UFE4 941 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 PCOLCE2Q9UKZ9 415 aa6.37□□□□□ -1.39
USP47-204ENST00000525078 ANKRD18BA2A2Z9 1011 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 KRBA1A5PL33 1030 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 NEURL1BA8MQ27 555 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 DLL1O00548 723 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 SCDO00767 359 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 IRAK2O43187 625 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 GNAT1P11488 350 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 ADH5P11766 374 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 PAMP19021 973 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 ARL4CP56559 192 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 APBA1Q02410 837 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 ZNF543Q08ER8 600 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 TAF5Q15542 800 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 GPR19Q15760 415 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 ANGEL2Q5VTE6 544 aaKnown RBP6.36□□□□□ -1.39
USP47-204ENST00000525078 GPAT2Q6NUI2 795 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 CCDC62Q6P9F0 684 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 RFX8Q6ZV50 586 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 KLHDC4Q8TBB5 520 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 RTF1Q92541 710 aaKnown RBP6.36□□□□□ -1.39
USP47-204ENST00000525078 DDX11Q96FC9 970 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 FCRL3Q96P31 734 aaPredicted RBP6.36□□□□□ -1.39
USP47-204ENST00000525078 BARD1Q99728 777 aaKnown RBP6.36□□□□□ -1.39
USP47-204ENST00000525078 TTLL2Q9BWV7 592 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 AP1M1Q9BXS5 423 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 PLEKHA5Q9HAU0 1116 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 SMURF1Q9HCE7 757 aa6.36□□□□□ -1.39
USP47-204ENST00000525078 PNPLA8Q9NP80 782 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms