RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 PSMC5P62195 406 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 PAK2Q13177 524 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 NR5A1Q13285 461 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 PPP2R5CQ13362 524 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 LPIN1Q14693 890 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 FAM117BQ6P1L5 589 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.32■□□□□ 0.525e-7■□□□□ 9.5
LSM1-205ENST00000523511 KIAA0319LQ8IZA0 1049 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 YME1L1Q96TA2 773 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 TSPYL2Q9H2G4 693 aaPredicted RBP18.32■□□□□ 0.52
LSM1-205ENST00000523511 GINS2Q9Y248 185 aa18.32■□□□□ 0.52
LSM1-205ENST00000523511 GPR182O15218 404 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 UPP2O95045 317 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 P4HBP07237 508 aaKnown RBP18.31■□□□□ 0.52
LSM1-205ENST00000523511 CRYBB1P53674 252 aaPredicted RBP18.31■□□□□ 0.52
LSM1-205ENST00000523511 PRKCEQ02156 737 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 TBC1D8BQ0IIM8 1120 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 TMEM62Q0P6H9 643 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 EFCAB12Q6NXP0 572 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 OTUD6AQ7L8S5 288 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 KCNMB3Q9NPA1 279 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 PCDHA12Q9UN75 941 aa18.31■□□□□ 0.52
LSM1-205ENST00000523511 DDX11L8A8MPP1 907 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 ENPP3O14638 875 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 SLC37A4O43826 429 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 RPS6KA5O75582 802 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 C22orf31O95567 290 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 STAG3L1P0CL83 205 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 QARSP47897 775 aaKnown RBP18.3■□□□□ 0.52
LSM1-205ENST00000523511 TAP1Q03518 808 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 NFX1Q12986 1120 aaKnown RBP18.3■□□□□ 0.52
LSM1-205ENST00000523511 ARNTL2Q8WYA1 636 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 SAMD11Q96NU1 681 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 TGS1Q96RS0 853 aaKnown RBP18.3■□□□□ 0.52
LSM1-205ENST00000523511 KIF2CQ99661 725 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 NIFKQ9BYG3 293 aaKnown RBP18.3■□□□□ 0.52
LSM1-205ENST00000523511 SUGCTQ9HAC7 445 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 PADI3Q9ULW8 664 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 AKT3Q9Y243 479 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 PPME1Q9Y570 386 aa18.3■□□□□ 0.52
LSM1-205ENST00000523511 CD52P31358 61 aa18.29■□□□□ 0.52
LSM1-205ENST00000523511 EPHA7Q15375 998 aa18.29■□□□□ 0.52
LSM1-205ENST00000523511 CALCRLQ16602 461 aa18.29■□□□□ 0.52
LSM1-205ENST00000523511 TCTN1Q2MV58 587 aa18.29■□□□□ 0.52
LSM1-205ENST00000523511 B3GNT9Q6UX72 402 aa18.29■□□□□ 0.52
LSM1-205ENST00000523511 GJA10Q969M2 543 aa18.29■□□□□ 0.52
LSM1-205ENST00000523511 ZBTB10Q96DT7 871 aa18.29■□□□□ 0.52
LSM1-205ENST00000523511 FOXP1Q9H334 677 aaPredicted RBP18.29■□□□□ 0.52
LSM1-205ENST00000523511 SEPT9Q9UHD8 586 aaPredicted RBP18.29■□□□□ 0.52
LSM1-205ENST00000523511 TANC1Q9C0D5 1861 aa18.29■□□□□ 0.52
LSM1-205ENST00000523511 ZBTB42B2RXF5 422 aa18.28■□□□□ 0.52
LSM1-205ENST00000523511 ZNF862O60290 1169 aa18.28■□□□□ 0.52
LSM1-205ENST00000523511 NEMFO60524 1076 aa18.28■□□□□ 0.52
LSM1-205ENST00000523511 DTNBO60941 627 aa18.28■□□□□ 0.52
LSM1-205ENST00000523511 FOSBP53539 338 aa18.28■□□□□ 0.52
LSM1-205ENST00000523511 HTRA4P83105 476 aaPredicted RBP18.28■□□□□ 0.52
LSM1-205ENST00000523511 ORC2Q13416 577 aaPredicted RBP18.28■□□□□ 0.52
LSM1-205ENST00000523511 MKRN4PQ13434 485 aaPredicted RBP18.28■□□□□ 0.52
LSM1-205ENST00000523511 TMCO2Q7Z6W1 182 aaPredicted RBP18.28■□□□□ 0.52
LSM1-205ENST00000523511 FBXO18Q8NFZ0 1043 aa18.28■□□□□ 0.52
LSM1-205ENST00000523511 TNFRSF25Q93038 417 aa18.28■□□□□ 0.52
LSM1-205ENST00000523511 LRFN2Q9ULH4 789 aa18.28■□□□□ 0.52
LSM1-205ENST00000523511 NOL7Q9UMY1 257 aaKnown RBP18.28■□□□□ 0.52
LSM1-205ENST00000523511 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.27■□□□□ 0.52
LSM1-205ENST00000523511 DENND3A2RUS2 1198 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 MTERF2Q49AM1 385 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 NCAPH2Q6IBW4 605 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 SLC7A3Q8WY07 619 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 HAS1Q92839 578 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 SCLT1Q96NL6 688 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 INO80BQ9C086 356 aaPredicted RBP18.27■□□□□ 0.52
LSM1-205ENST00000523511 ZSWIM4Q9H7M6 989 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 AGO3Q9H9G7 860 aaKnown RBP18.27■□□□□ 0.52
LSM1-205ENST00000523511 CERS4Q9HA82 394 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 LMCD1Q9NZU5 365 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 RWDD3Q9Y3V2 267 aa18.27■□□□□ 0.52
LSM1-205ENST00000523511 LINC01553A4QN01 128 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 ZSCAN20P17040 1043 aaPredicted RBP18.26■□□□□ 0.51
LSM1-205ENST00000523511 POU3F3P20264 500 aaPredicted RBP18.26■□□□□ 0.51
LSM1-205ENST00000523511 NLRP11P59045 1033 aaKnown RBP18.26■□□□□ 0.51
LSM1-205ENST00000523511 ERVK-21P61565 698 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 GUCY1B3Q02153 619 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 KIZQ2M2Z5 673 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 EARS2Q5JPH6 523 aaKnown RBP18.26■□□□□ 0.51
LSM1-205ENST00000523511 POTEDQ86YR6 584 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.26■□□□□ 0.51
LSM1-205ENST00000523511 C4orf19Q8IY42 314 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 FIBCD1Q8N539 461 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 BANK1Q8NDB2 785 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 NEK9Q8TD19 979 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 PPM1EQ8WY54 764 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 TTC12Q9H892 705 aaPredicted RBP18.26■□□□□ 0.51
LSM1-205ENST00000523511 C1orf112Q9NSG2 853 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 VAV3Q9UKW4 847 aa18.26■□□□□ 0.51
LSM1-205ENST00000523511 DOCK5Q9H7D0 1870 aa18.25■□□□□ 0.51
LSM1-205ENST00000523511 VTNP04004 478 aa18.25■□□□□ 0.51
LSM1-205ENST00000523511 ATP2B1P20020 1258 aa18.25■□□□□ 0.51
LSM1-205ENST00000523511 TXKP42681 527 aa18.25■□□□□ 0.51
LSM1-205ENST00000523511 TRAPPC10P48553 1259 aa18.25■□□□□ 0.51
LSM1-205ENST00000523511 CLCN3P51790 818 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms