RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 RTP3Q9BQQ7 232 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 IGFLR1Q9H665 355 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 C7orf69Q9H7B7 122 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 CTNNA3Q9UI47 895 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 CD207Q9UJ71 328 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 GMEB2Q9UKD1 530 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 SMG5Q9UPR3 1016 aaKnown RBP4.28□□□□□ -1.72
CPNE3-204ENST00000517862 TLR6Q9Y2C9 796 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 EFR3BQ9Y2G0 817 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 NOTCH1P46531 2555 aa4.28□□□□□ -1.72
CPNE3-204ENST00000517862 CACNA1IQ9P0X4 2223 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 RFX7Q2KHR2 1363 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 A0A1B0GUL6 1792 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 MYO3BQ8WXR4 1341 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 A0A1W2PP55 124 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 OVOL3O00110 214 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 CAPN9O14815 690 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 NCK2O43639 380 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 RGS9O75916 674 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-204ENST00000517862 SASH3O75995 380 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 ETFBP38117 255 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 PIP4K2AP48426 406 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-204ENST00000517862 HLFQ16534 295 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 PEAR1Q5VY43 1037 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-204ENST00000517862 MFSD14CQ5VZR4 134 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 EGFLAMQ63HQ2 1017 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 PSAPL1Q6NUJ1 521 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 ZNF746Q6NUN9 644 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-204ENST00000517862 TRIM42Q8IWZ5 723 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 CKAP2LQ8IYA6 745 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 KREMEN2Q8NCW0 462 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 RASGRP4Q8TDF6 673 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 SOCS4Q8WXH5 440 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 BHMTQ93088 406 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 MRPL38Q96DV4 380 aaKnown RBP4.27□□□□□ -1.73
CPNE3-204ENST00000517862 EAF1Q96JC9 268 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-204ENST00000517862 SPACA7Q96KW9 195 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 MYRFLQ96LU7 910 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 PNMA5Q96PV4 448 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 SLC30A3Q99726 388 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 TEX13AQ9BXU3 409 aaPredicted RBP4.27□□□□□ -1.73
CPNE3-204ENST00000517862 SRCIN1Q9C0H9 1055 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 SLC52A2Q9HAB3 445 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 GINM1Q9NU53 330 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 AKAP2Q9Y2D5 859 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 HCFC2Q9Y5Z7 792 aa4.27□□□□□ -1.73
CPNE3-204ENST00000517862 UTP20O75691 2785 aaKnown RBP4.27□□□□□ -1.73
CPNE3-204ENST00000517862 STAB1Q9NY15 2570 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 UTYO14607 1347 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 PRNPP04156 253 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 CELA3AP09093 270 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 EPB42P16452 691 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 CYP2C18P33260 490 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 EIF4A3P38919 411 aaKnown RBP4.26□□□□□ -1.73
CPNE3-204ENST00000517862 CFHR1Q03591 330 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 LY6DQ14210 128 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 PTPROQ16827 1216 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 DACT2Q5SW24 774 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 TTC39BQ5VTQ0 682 aaPredicted RBP4.26□□□□□ -1.73
CPNE3-204ENST00000517862 SNRNP48Q6IEG0 339 aaKnown RBP4.26□□□□□ -1.73
CPNE3-204ENST00000517862 CCDC81Q6ZN84 652 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 GADL1Q6ZQY3 521 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 Q6ZS46 218 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 ANKS3Q6ZW76 656 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 GGNQ86UU5 652 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 LSM14AQ8ND56 463 aaKnown RBP4.26□□□□□ -1.73
CPNE3-204ENST00000517862 TMEM40Q8WWA1 233 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 MRFAP1L1Q96HT8 127 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 CHMP4AQ9BY43 222 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.26□□□□□ -1.73
CPNE3-204ENST00000517862 ABCB6Q9NP58 842 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 UBP1Q9NZI7 540 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 LOC285556D6RIA3 1793 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 ANKRD36CQ5JPF3 1778 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 UBR2Q8IWV8 1755 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 ARAP2Q8WZ64 1704 aa4.26□□□□□ -1.73
CPNE3-204ENST00000517862 URB1O60287 2271 aaKnown RBP4.25□□□□□ -1.73
CPNE3-204ENST00000517862 AHCTF1Q8WYP5 2266 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 USP9YO00507 2555 aaPredicted RBP4.25□□□□□ -1.73
CPNE3-204ENST00000517862 HMX2A2RU54 273 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 METTL12A8MUP2 240 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 TM4SF5O14894 197 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 MMP20O60882 483 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 APC2O95996 2303 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 TARSP26639 723 aaKnown RBP4.25□□□□□ -1.73
CPNE3-204ENST00000517862 RGS2P41220 211 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 ZNF252P-AS1Q0IIN9 211 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 TTLL4Q14679 1199 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 FBXL19Q6PCT2 694 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 DTHD1Q6ZMT9 781 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 FASTKD5Q7L8L6 764 aaKnown RBP4.25□□□□□ -1.73
CPNE3-204ENST00000517862 HERC6Q8IVU3 1022 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 RPUSD2Q8IZ73 545 aaKnown RBP4.25□□□□□ -1.73
CPNE3-204ENST00000517862 TTC5Q8N0Z6 440 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 DCAF11Q8TEB1 546 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 FAM168AQ92567 244 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 ANAPC16Q96DE5 110 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 RHOVQ96L33 236 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 TMEM74Q96NL1 305 aa4.25□□□□□ -1.73
CPNE3-204ENST00000517862 HHIPQ96QV1 700 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms