RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FRMD5Q7Z6J6 570 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 RDH13Q8NBN7 331 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 MYH1P12882 1939 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 ZBTB39O15060 712 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 SERPINB2P05120 415 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 EPHA7Q15375 998 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 SLFN13Q68D06 897 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 PPP1R18Q6NYC8 613 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 C15orf52Q6ZUT6 534 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 VPS36Q86VN1 386 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 SLC35C1Q96A29 364 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 ATP8A1Q9Y2Q0 1164 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 BUB1BO60566 1050 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 FGGP02679 453 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 EEF2P13639 858 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 NMT1P30419 496 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 ZC2HC1CQ53FD0 456 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 ARFGAP2Q8N6H7 521 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 ACTRT1Q8TDG2 376 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 RUSC1Q9BVN2 902 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 CNOT8Q9UFF9 292 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 TRAF3IP3Q9Y228 551 aa10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 BZW2Q9Y6E2 419 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-215ENST00000512632 FAM86B1E9PN63 330 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 H0YGN5 161 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 MEIS2O14770 477 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 TBCAO75347 108 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 FAM86B2P0C5J1 330 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 MAGOHP61326 146 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 PPP4R3CPQ6ZMV5 832 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 MAGOHBQ96A72 148 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 PCDHAC2Q9Y5I4 1007 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 NFS1Q9Y697 457 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 COL16A1Q07092 1604 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 TLDC2A0PJX2 215 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 CHMP2AO43633 222 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 CALUO43852 315 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 EVI5O60447 810 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 ZNF76P36508 570 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 CUL1Q13616 776 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 ARHGAP44Q17R89 818 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 SAMD1Q6SPF0 538 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 MICALCLQ6ZW33 695 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 SYT2Q8N9I0 419 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 SIX2Q9NPC8 291 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 FRMD3A2A2Y4 597 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 SMIM23A6NLE4 172 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 FAM107AO95990 144 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 STAT1P42224 750 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 FNTAP49354 379 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 IFFO1Q0D2I5 559 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 CTTNQ14247 550 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 QPCTQ16769 361 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 C10orf76Q5T2E6 689 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 MCTP2Q6DN12 878 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 CDC42EP5Q6NZY7 148 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 NT5DC3Q86UY8 548 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 ERMNQ8TAM6 284 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 UHMK1Q8TAS1 419 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 MDM1Q8TC05 714 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 PITPNM2Q9BZ72 1349 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 GOPCQ9HD26 462 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 AMFRQ9UKV5 643 aa10.08□□□□□ -0.8
LIMCH1-215ENST00000512632 GMNCA6NCL1 334 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 RGL2O15211 777 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 HLA-DOAP06340 250 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 RPA1P27694 616 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 SPIRE1Q08AE8 756 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 PLS1Q14651 629 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 SLFN12Q8IYM2 578 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 LMBR1Q8WVP7 490 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 GLG1Q92896 1179 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 CYFIP2Q96F07 1278 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 ZC3H12CQ9C0D7 883 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 CHORDC1Q9UHD1 332 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 PPP1R9AQ9ULJ8 1098 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 SPDYE3A6NKU9 549 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 EML1O00423 815 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 PDXKO00764 312 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 RPL13P26373 211 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 HOXA7P31268 230 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 COG2Q14746 738 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 CHADLQ6NUI6 762 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 MYCT1Q8N699 235 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 CCDC26Q8TAB7 109 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 LNX1Q8TBB1 728 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 RBM17Q96I25 401 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 SWAP70Q9UH65 585 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 GOLGB1Q14789 3259 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 ASTN1O14525 1302 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 TRIM49P0CI25 452 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 TRIM49CP0CI26 452 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 CYP2J2P51589 502 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 RUFY4Q6ZNE9 571 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 TPH2Q8IWU9 490 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 SUGP1Q8IWZ8 645 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 SLC35G2Q8TBE7 412 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 ETNPPLQ8TBG4 499 aa10.07□□□□□ -0.8
LIMCH1-215ENST00000512632 DDX60LQ5H9U9 1706 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms