RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 AP3B1O00203 1094 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 KPNA4O00629 521 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 ACSL3O95573 720 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 HSPD1P10809 573 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 CTCFP49711 727 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 RCSD1Q6JBY9 416 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 EME1Q96AY2 570 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 EML4Q9HC35 981 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 DKK3Q9UBP4 350 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 KCNJ14Q9UNX9 436 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 PFASO15067 1338 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 PPIP5K2O43314 1243 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 ANP32DO95626 131 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 APOA4P06727 396 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 NR2F2P24468 414 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 DMP1Q13316 513 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 ARHGAP22Q7Z5H3 698 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 SKA2Q8WVK7 121 aaPredicted RBP11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 DLGAP2Q9P1A6 1054 aa11.98□□□□□ -0.49
LIMCH1-208ENST00000508501 SMAPO00193 183 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 FTCDO95954 541 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 NUP62P37198 522 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 SFSWAPQ12872 951 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 ZCWPW2Q504Y3 356 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 FANCBQ8NB91 859 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 ACRBPQ8NEB7 543 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 STAMQ92783 540 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 KLHL25Q9H0H3 589 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 EPC1Q9H2F5 836 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 PAPOLBQ9NRJ5 636 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 CFAP69A5D8W1 941 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 IRS4O14654 1257 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 FGGP02679 453 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 VCAM1P19320 739 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 HNRNPH1P31943 449 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 RFC4P35249 363 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 ARMCX4Q5H9R4 360 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 TMED8Q6PL24 325 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 NDUFAF2Q8N183 169 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 SIX6OS1Q8N1H7 587 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 PCYOX1LQ8NBM8 494 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 RMDN1Q96DB5 314 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 RNF26Q9BY78 433 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 C14orf93Q9H972 538 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 NFIBO00712 420 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 CATSPER3Q86XQ3 398 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 TPH2Q8IWU9 490 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 SYMPKQ92797 1274 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 ROPN1BQ9BZX4 212 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 ROPN1Q9HAT0 212 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 ATAD3AQ9NVI7 634 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 ZFATQ9P243 1243 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 PRPSAP2O60256 369 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 DPCR1Q3MIW9 517 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 RRM2BQ7LG56 351 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 MICU2Q8IYU8 434 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 RIBC1Q8N443 379 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 TNIP2Q8NFZ5 429 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 GPHNQ9NQX3 736 aaPredicted RBP11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 VPS54Q9P1Q0 977 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 SOX13Q9UN79 622 aa11.97□□□□□ -0.49
LIMCH1-208ENST00000508501 EPRSP07814 1512 aaKnown RBP11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 SOWAHDA6NJG2 315 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 ORC4O43929 436 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 HDLBPQ00341 1268 aaKnown RBP11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 KRT72Q14CN4 511 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 TRPM8Q7Z2W7 1104 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 MED10Q9BTT4 135 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 KDM4CQ9H3R0 1056 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 PIK3CAP42336 1068 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 SLC12A1Q13621 1099 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 GPR141Q7Z602 305 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 LPIN2Q92539 896 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 ACCSQ96QU6 501 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 ADNPQ9H2P0 1102 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 CLEC4MQ9H2X3 399 aaPredicted RBP11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 RHBDL2Q9NX52 303 aa11.96□□□□□ -0.49
LIMCH1-208ENST00000508501 MYO1DO94832 1006 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 RALBP11234 206 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 TCF3P15923 654 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 SOX6P35712 828 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 PTK2BQ14289 1009 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 PPIP5K1Q6PFW1 1433 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 PROM2Q8N271 834 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 KCTD6Q8NC69 237 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 TTC8Q8TAM2 541 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 SNX19Q92543 992 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 TEKT3Q9BXF9 490 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 CARD9Q9H257 536 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 TRPC7Q9HCX4 862 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 PRG3Q9Y2Y8 225 aaPredicted RBP11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 PCDHB4Q9Y5E5 795 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 KDRP35968 1356 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 ADGRA3Q8IWK6 1321 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 PRDM2Q13029 1718 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 FAM95CA0A1B0GW59 222 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 KANSL1LA0AUZ9 987 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 DYTNA2CJ06 578 aa11.96□□□□□ -0.5
LIMCH1-208ENST00000508501 KRT87PA6NCN2 255 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms