RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 BICD2Q8TD16 824 aa23.89■■□□□ 1.41
SQSTM1-210ENST00000506042 POF1BQ8WVV4 589 aa23.89■■□□□ 1.41
SQSTM1-210ENST00000506042 FAM167AQ96KS9 214 aa23.89■■□□□ 1.41
SQSTM1-210ENST00000506042 PCYT2Q99447 389 aa23.89■■□□□ 1.41
SQSTM1-210ENST00000506042 DDX39AO00148 427 aaKnown RBP23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 IPO5O00410 1097 aaKnown RBP23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 ITGB1P05556 798 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 ARP10275 920 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 IBSPP21815 317 aaPredicted RBP23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 IRS1P35568 1242 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 BMS1Q14692 1282 aaKnown RBP23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 BMP2KLQ5H9B9 411 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 SPPL3Q8TCT6 385 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 TRAPPC12Q8WVT3 735 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 BBXQ8WY36 941 aaPredicted RBP23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 MAP7D2Q96T17 732 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 PRRX2Q99811 253 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 ZNF577Q9BSK1 485 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 TLE6Q9H808 572 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 ATP6V0A4Q9HBG4 840 aa23.88■■□□□ 1.41
SQSTM1-210ENST00000506042 KLF18A0A0U1RQI7 1052 aa23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 MAGEB2O15479 319 aa23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 PSAPP07602 524 aa23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 LINC00271P0C7V0 271 aa23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 HERC4Q5GLZ8 1057 aaPredicted RBP23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 ZNF746Q6NUN9 644 aaPredicted RBP23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 THNSL1Q8IYQ7 743 aa23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 ABI1Q8IZP0 508 aa23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 TLR9Q9NR96 1032 aa23.87■■□□□ 1.41
SQSTM1-210ENST00000506042 IGKV6D-21A0A0A0MT36 114 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 TBX10O75333 385 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 LAG3P18627 525 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 NRIP1P48552 1158 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 CRYBB1P53674 252 aaPredicted RBP23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 ABHD15Q6UXT9 468 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 REXO1Q8N1G1 1221 aaKnown RBP23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 METTL13Q8N6R0 699 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 CYP2W1Q8TAV3 490 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 LINC01599Q8WXQ3 324 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 ADAM2Q99965 735 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 RGS18Q9NS28 235 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 SAMM50Q9Y512 469 aa23.86■■□□□ 1.41
SQSTM1-210ENST00000506042 ESYT2A0FGR8 921 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 CARNS1A5YM72 827 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 TBKBP1A7MCY6 615 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 EYA4O95677 639 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 ZSCAN20P17040 1043 aaPredicted RBP23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 PPM1AP35813 382 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 METAP2P50579 478 aaKnown RBP eCLIP23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 COASYQ13057 564 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 ITGB3BPQ13352 177 aaPredicted RBP23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 SWSAP1Q6NVH7 229 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 RTN4RL1Q86UN2 441 aaPredicted RBP23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 RNF135Q8IUD6 432 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 CCDC148Q8NFR7 591 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 PGBD1Q96JS3 809 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 ELAC1Q9H777 363 aaKnown RBP23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 ERVK-5Q9HDB9 667 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 TMEM161AQ9NX61 479 aa23.85■■□□□ 1.41
SQSTM1-210ENST00000506042 LOXHD1Q8IVV2 1947 aa23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 CYP3A4P08684 503 aa23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 TMEM266Q2M3C6 531 aa23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 TSGA10IPQ3SY00 556 aa23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 SUGP1Q8IWZ8 645 aaKnown RBP23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 CRIPAKQ8N1N5 446 aa23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 SMRP1Q8NCR6 262 aa23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 ST3GAL5Q9UNP4 418 aa23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 PCDHA10Q9Y5I2 948 aa23.84■■□□□ 1.41
SQSTM1-210ENST00000506042 KIAA1671Q9BY89 1806 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 PPFIA3O75145 1194 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 CLK2P49760 499 aaKnown RBP23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 IRX6P78412 446 aaPredicted RBP23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 KRT17Q04695 432 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 DLX2Q07687 328 aaPredicted RBP23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 PFKFB3Q16875 520 aaPredicted RBP23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 JAKMIP3Q5VZ66 844 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 RSPH1Q8WYR4 309 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 EDAQ92838 391 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 ZBTB10Q96DT7 871 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 MSLNLQ96KJ4 702 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 SCLT1Q96NL6 688 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 NRBP2Q9NSY0 501 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 LZTS1Q9Y250 596 aa23.83■■□□□ 1.41
SQSTM1-210ENST00000506042 FGF18O76093 207 aa23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 CDC42EP1Q00587 391 aa23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 EXOSC10Q01780 885 aaKnown RBP23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 RBM23Q86U06 439 aaKnown RBP23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 CCDC60Q8IWA6 550 aaPredicted RBP23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 KIAA0319LQ8IZA0 1049 aa23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 TMEM260Q9NX78 707 aa23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 MUTYHQ9UIF7 546 aa23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 AKT3Q9Y243 479 aa23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 NOC2LQ9Y3T9 749 aaKnown RBP23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 ATG2AQ2TAZ0 1938 aa23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 MYH9P35579 1960 aaKnown RBP23.82■■□□□ 1.4
SQSTM1-210ENST00000506042 WDR64B1ANS9 1081 aa23.81■■□□□ 1.4
SQSTM1-210ENST00000506042 LINC01565O15544 149 aa23.81■■□□□ 1.4
SQSTM1-210ENST00000506042 CDC45O75419 566 aa23.81■■□□□ 1.4
SQSTM1-210ENST00000506042 PHF7Q9BWX1 381 aaPredicted RBP23.81■■□□□ 1.4
SQSTM1-210ENST00000506042 C22orf23Q9BZE7 217 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms