RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 C10orf76Q5T2E6 689 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 UBAP2Q5T6F2 1119 aaKnown RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 EPM2AIP1Q7L775 607 aaPredicted RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 CCDC91Q7Z6B0 441 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 SFR1Q86XK3 245 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 LRRC45Q96CN5 670 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 SEC16BQ96JE7 1060 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 REEP2Q9BRK0 252 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 TRIM31Q9BZY9 425 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 DDX4Q9NQI0 724 aaKnown RBP12.97□□□□□ -0.33
UBE3D-206ENST00000505226 TRAF3IP3Q9Y228 551 aa12.97□□□□□ -0.33
UBE3D-206ENST00000505226 DHX9Q08211 1270 aaKnown RBP12.96□□□□□ -0.33
UBE3D-206ENST00000505226 PABPC4Q13310 644 aaKnown RBP eCLIP12.96□□□□□ -0.33
UBE3D-206ENST00000505226 KNOP1Q1ED39 458 aaKnown RBP12.96□□□□□ -0.33
UBE3D-206ENST00000505226 MFSD14BQ5SR56 506 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 FRMD5Q7Z6J6 570 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 DAAM2Q86T65 1068 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 FAM228AQ86W67 206 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 LNX1Q8TBB1 728 aaPredicted RBP12.96□□□□□ -0.33
UBE3D-206ENST00000505226 ARHGEF1Q92888 912 aaKnown RBP12.96□□□□□ -0.33
UBE3D-206ENST00000505226 HES6Q96HZ4 224 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 EPB41L4BQ9H329 900 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 PPP1R9AQ9ULJ8 1098 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 IGSF9BQ9UPX0 1349 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 KDM3AQ9Y4C1 1321 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 F8VZ95 297 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 RPS6KA4O75676 772 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 SPATA31C1P0DKV0 1188 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 BIRC3Q13489 604 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 ODF2Q5BJF6 829 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 ADAT2Q7Z6V5 191 aaKnown RBP12.96□□□□□ -0.33
UBE3D-206ENST00000505226 SLC35C1Q96A29 364 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 TXLNGYQ9BZA5 131 aa12.96□□□□□ -0.33
UBE3D-206ENST00000505226 SUCLA2Q9P2R7 463 aaPredicted RBP12.96□□□□□ -0.33
UBE3D-206ENST00000505226 F8W031 263 aaPredicted RBP12.96□□□□□ -0.34
UBE3D-206ENST00000505226 SHBGP04278 402 aa12.96□□□□□ -0.34
UBE3D-206ENST00000505226 KRT18P05783 430 aaKnown RBP12.96□□□□□ -0.34
UBE3D-206ENST00000505226 GALCP54803 685 aa12.96□□□□□ -0.34
UBE3D-206ENST00000505226 ARFGAP2Q8N6H7 521 aa12.96□□□□□ -0.34
UBE3D-206ENST00000505226 U2AF1L4Q8WU68 220 aaKnown RBP12.96□□□□□ -0.34
UBE3D-206ENST00000505226 PLIN4Q96Q06 1357 aa12.96□□□□□ -0.34
UBE3D-206ENST00000505226 ASTN1O14525 1302 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 SPATA31A5Q5VU36 1347 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 SPATA31A7Q8IWB4 1347 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 C5orf60A6NFR6 353 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 CLIC2O15247 247 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 BUB1BO60566 1050 aaPredicted RBP12.95□□□□□ -0.34
UBE3D-206ENST00000505226 GFPT2O94808 682 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 SHROOM1Q2M3G4 852 aaPredicted RBP12.95□□□□□ -0.34
UBE3D-206ENST00000505226 ANKRD20A8PQ5CZ79 823 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 FAM163AQ96GL9 167 aaPredicted RBP12.95□□□□□ -0.34
UBE3D-206ENST00000505226 ERVK-5Q9HDB9 667 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 BZW2Q9Y6E2 419 aaKnown RBP12.95□□□□□ -0.34
UBE3D-206ENST00000505226 GAKO14976 1311 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 ZBTB5O15062 677 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 UFL1O94874 794 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 FGGP02679 453 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 PAEPP09466 180 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 H2AFZP0C0S5 128 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 XRCC5P13010 732 aaKnown RBP12.95□□□□□ -0.34
UBE3D-206ENST00000505226 IL1R1P14778 569 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 USP8P40818 1118 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 MRPL12P52815 198 aaKnown RBP12.95□□□□□ -0.34
UBE3D-206ENST00000505226 AGBL2Q5U5Z8 902 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 TCERG1LQ5VWI1 586 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 PPP4R3CPQ6ZMV5 832 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 H2AFVQ71UI9 128 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 SLC30A5Q8TAD4 765 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 TATDN2Q93075 761 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 ATP8A1Q9Y2Q0 1164 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 DAGLAQ9Y4D2 1042 aa12.95□□□□□ -0.34
UBE3D-206ENST00000505226 CCDC188H7C350 402 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 DDX3YO15523 660 aaKnown RBP12.94□□□□□ -0.34
UBE3D-206ENST00000505226 CAND2O75155 1236 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 FLOT1O75955 427 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 GCFC2P16383 781 aaKnown RBP12.94□□□□□ -0.34
UBE3D-206ENST00000505226 SF3A3Q12874 501 aaKnown RBP eCLIP12.94□□□□□ -0.34
UBE3D-206ENST00000505226 KRT71Q3SY84 523 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 PPP1R18Q6NYC8 613 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 RUFY4Q6ZNE9 571 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 CCDC121Q6ZUS5 278 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 GLG1Q92896 1179 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 HAUS2Q9NVX0 235 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 GCNT4Q9P109 453 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 KIF13BQ9NQT8 1826 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 PITPNM2Q9BZ72 1349 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 SFI1A8K8P3 1242 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 TTLL1O95922 423 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 DRD4P21917 467 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 MAP2K2P36507 400 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 C15orf52Q6ZUT6 534 aaKnown RBP12.94□□□□□ -0.34
UBE3D-206ENST00000505226 GLYCTKQ8IVS8 523 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 FUKQ8N0W3 1084 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 A1CFQ9NQ94 594 aaKnown RBP12.94□□□□□ -0.34
UBE3D-206ENST00000505226 NRAPQ86VF7 1730 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 ATP2C2O75185 946 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 NR3C1P04150 777 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 TAL1P17542 331 aaPredicted RBP12.94□□□□□ -0.34
UBE3D-206ENST00000505226 PLCB4Q15147 1175 aa12.94□□□□□ -0.34
UBE3D-206ENST00000505226 IFI16Q16666 785 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms