RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 PRR16Q569H4 304 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 DACT2Q5SW24 774 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 TBC1D5Q92609 795 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 LSM14BQ9BX40 385 aaKnown RBP17.93■□□□□ 0.46
COL6A1-206ENST00000498614 PACSIN1Q9BY11 444 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 GLT8D2Q9H1C3 349 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 DHX36Q9H2U1 1008 aaKnown RBP17.93■□□□□ 0.46
COL6A1-206ENST00000498614 GRID2IPA4D2P6 1211 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 FSBPO95073 299 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 HOXA7P31268 230 aaPredicted RBP17.93■□□□□ 0.46
COL6A1-206ENST00000498614 POLR2FP61218 127 aaKnown RBP17.93■□□□□ 0.46
COL6A1-206ENST00000498614 ARHGAP4P98171 946 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 ARHGAP27Q6ZUM4 889 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 SCFD1Q8WVM8 642 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 PLAAQ9Y263 795 aa17.93■□□□□ 0.46
COL6A1-206ENST00000498614 MEIS1O00470 390 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 CLSTN1O94985 981 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 MDH1P40925 334 aaKnown RBP17.92■□□□□ 0.46
COL6A1-206ENST00000498614 HDLBPQ00341 1268 aaKnown RBP17.92■□□□□ 0.46
COL6A1-206ENST00000498614 ARID5AQ03989 594 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 ARSHQ5FYA8 562 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 STRIP1Q5VSL9 837 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 FOXR2Q6PJQ5 311 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 MAATS1Q7Z4T9 603 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 NLRP14Q86W24 1093 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 SPATS2Q86XZ4 545 aaKnown RBP17.92■□□□□ 0.46
COL6A1-206ENST00000498614 KLHL7Q8IXQ5 586 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 WHAMMQ8TF30 809 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 CCT8L2Q96SF2 557 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 PAGR1Q9BTK6 254 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 EMILIN3Q9NT22 766 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 PCDHGC5Q9Y5F6 944 aa17.92■□□□□ 0.46
COL6A1-206ENST00000498614 CYP3A7-CYP3A51PA0A087WV96 503 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 A0A087X0T9 212 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 F5H6K3 240 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 FAM228BP0C875 321 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 CYP3A7P24462 503 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 PSMC6P62333 389 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 KLRC3Q07444 240 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 ITGB3BPQ13352 177 aaPredicted RBP17.91■□□□□ 0.46
COL6A1-206ENST00000498614 ENOX2Q16206 610 aaKnown RBP17.91■□□□□ 0.46
COL6A1-206ENST00000498614 CEP85LQ5SZL2 805 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 MYCBPAPQ8TBZ2 947 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.91■□□□□ 0.46
COL6A1-206ENST00000498614 H0YHG0 523 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 SLC12A3P55017 1021 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 PPARDQ03181 441 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 KIAA0753Q2KHM9 967 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 GRIPAP1Q4V328 841 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 CATSPER3Q86XQ3 398 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 SLFN12Q8IYM2 578 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 ETNPPLQ8TBG4 499 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 SYN2Q92777 582 aaPredicted RBP17.91■□□□□ 0.46
COL6A1-206ENST00000498614 CEP63Q96MT8 703 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 MBOAT7Q96N66 472 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 AMNQ9BXJ7 453 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 KCTD10Q9H3F6 313 aa17.91■□□□□ 0.46
COL6A1-206ENST00000498614 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.91■□□□□ 0.46
COL6A1-206ENST00000498614 HMGB1P1B2RPK0 211 aaPredicted RBP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 MYBP10242 640 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 HSPA9P38646 679 aaKnown RBP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 USP8P40818 1118 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 SPIRE1Q08AE8 756 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 AP3B2Q13367 1082 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 SLC18A3Q16572 532 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 TRIM59Q8IWR1 403 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 NIM1KQ8IY84 436 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 USP38Q8NB14 1042 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 MYCBPQ99417 103 aaPredicted RBP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 IDI2Q9BXS1 227 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 NDUFB10O96000 172 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 YBX3P16989 372 aaKnown RBP eCLIP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 HPDP32754 393 aaPredicted RBP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 CASP5P51878 434 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 ERVK-9P63128 1117 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 PABPC4Q13310 644 aaKnown RBP eCLIP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 ADAM9Q13443 819 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 RAPGEF1Q13905 1077 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 ABCB5Q2M3G0 1257 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 RNF187Q5TA31 235 aaPredicted RBP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 TATDN1Q6P1N9 297 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 TMEM179Q6ZVK1 233 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 MICALCLQ6ZW33 695 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 FBXO11Q86XK2 927 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 CRYGNQ8WXF5 182 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 NUCKS1Q9H1E3 243 aaKnown RBP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 TMBIM4Q9HC24 238 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 LUC7LQ9NQ29 371 aaKnown RBP17.9■□□□□ 0.46
COL6A1-206ENST00000498614 ADAMTS1Q9UHI8 967 aa17.9■□□□□ 0.46
COL6A1-206ENST00000498614 LOC102724159A0A0B4J2E5 919 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 FAM86B1E9PN63 330 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 FAM86B2P0C5J1 330 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 JAG1P78504 1218 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 PWP2Q15269 919 aaKnown RBP17.89■□□□□ 0.45
COL6A1-206ENST00000498614 CCDC91Q7Z6B0 441 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 C1orf131Q8NDD1 294 aaKnown RBP17.89■□□□□ 0.45
COL6A1-206ENST00000498614 CABS1Q96KC9 395 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 FER1L6Q2WGJ9 1857 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 ECHS1P30084 290 aa17.89■□□□□ 0.45
COL6A1-206ENST00000498614 HOXA13P31271 388 aaPredicted RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms