RNA–Protein interactions for RNA: ENST00000496910.1

EXOSC3-208, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 217 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-208ENST00000496910 MCM8Q9UJA3 840 aa4.61□□□□□ -1.67
EXOSC3-208ENST00000496910 PCDHA9Q9Y5H5 950 aa4.61□□□□□ -1.67
EXOSC3-208ENST00000496910 USP32Q8NFA0 1604 aa4.61□□□□□ -1.67
EXOSC3-208ENST00000496910 MARF1Q9Y4F3 1742 aaKnown RBP4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 BDP1A6H8Y1 2624 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 AQP7O14520 342 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 PRPF3O43395 683 aaKnown RBP4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 PDE8AO60658 829 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 EFCAB14O75071 495 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 JUNBP17275 347 aaPredicted RBP4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 SDHBP21912 280 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 GRK2P25098 689 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 GRK3P35626 688 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 NEK2P51955 445 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 YBX1P67809 324 aaKnown RBP4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 CYP4F8P98187 520 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 HLTFQ14527 1009 aaKnown RBP eCLIP4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 ZNF460Q14592 562 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 KIZQ2M2Z5 673 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 INO80DQ53TQ3 878 aaPredicted RBP4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 SIRT2Q8IXJ6 389 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 AFAP1L2Q8N4X5 818 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 LZTR1Q8N653 840 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 RTFDC1Q9BY42 306 aaPredicted RBP4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 PTPRHQ9HD43 1115 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 KLHL14Q9P2G3 628 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 TAGLN3Q9UI15 199 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 PLA2G2DQ9UNK4 145 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 PCDHA8Q9Y5H6 950 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 ABCC5O15440 1437 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 ERICH3Q5RHP9 1530 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 REREQ9P2R6 1566 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 GPR179Q6PRD1 2367 aa4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 FASNP49327 2511 aaKnown RBP4.6□□□□□ -1.67
EXOSC3-208ENST00000496910 LAMA2P24043 3122 aaKnown RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 TCRBV5S4A2TA0A5A2 114 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 GSG1L2A8MUP6 293 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 C22orf46C9J442 243 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 CCER2I3L3R5 266 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 ZNF500O60304 480 aaPredicted RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 FUCA1P04066 466 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 SOD2P04179 222 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 TAL1P17542 331 aaPredicted RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 FBLN1P23142 703 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 SOX5P35711 763 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 GTF2A2P52657 109 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 PRDM15P57071 1507 aaPredicted RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 KCNMB1Q16558 191 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 TMEM95Q3KNT9 176 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 EMC4Q5J8M3 183 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 CT47A1Q5JQC4 288 aaPredicted RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 WWC2Q6AWC2 1192 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 SLC4A10Q6U841 1118 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 CEP68Q76N32 757 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 STRA8Q7Z7C7 330 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 IRF2BP1Q8IU81 584 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 SPICE1Q8N0Z3 855 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 FAM168AQ92567 244 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 E2F7Q96AV8 911 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 LIN37Q96GY3 246 aaPredicted RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 IPO9Q96P70 1041 aaKnown RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 CFAP74Q9C0B2 1584 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 CDH19Q9H159 772 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 IPPKQ9H8X2 491 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 PPCSQ9HAB8 311 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 NOB1Q9ULX3 412 aaKnown RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 MAST1Q9Y2H9 1570 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 TNPO3Q9Y5L0 923 aaKnown RBP4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 HCFC2Q9Y5Z7 792 aa4.59□□□□□ -1.67
EXOSC3-208ENST00000496910 TTC28Q96AY4 2481 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 FMN1Q68DA7 1419 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 TBX3O15119 743 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 TADA3O75528 432 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 EYA4O95677 639 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 NTRK1P04629 796 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 CYBBP04839 570 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 POU3F2P20265 443 aaPredicted RBP4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 SLC6A11P48066 632 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 MECP2P51608 486 aaKnown RBP4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 IRAK1P51617 712 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 GUCY1A3Q02108 690 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 RAPGEF1Q13905 1077 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 MLC1Q15049 377 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 MCTP1Q6DN14 999 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 RPTNQ6XPR3 784 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 FAM43BQ6ZT52 329 aaPredicted RBP4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 BRINP3Q76B58 766 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 UNC5CLQ8IV45 518 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 NETO2Q8NC67 525 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 ATL2Q8NHH9 583 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 SH3RF2Q8TEC5 729 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 TMEM169Q96HH4 297 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 SMAD5Q99717 465 aaKnown RBP4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 JAM3Q9BX67 310 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 SLC6A17Q9H1V8 727 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 ZNF552Q9H707 407 aaPredicted RBP4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 INTS7Q9NVH2 962 aaKnown RBP4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 CLDND1Q9NY35 253 aa4.58□□□□□ -1.68
EXOSC3-208ENST00000496910 CBLCQ9ULV8 474 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms