RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 SYNRGQ9UMZ2 1314 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 NPHP3-ACAD11A0A0J9YXS1 232 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 PVALEFA0A1B0GWK0 134 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 BIN1O00499 593 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 KRT18P05783 430 aaKnown RBP12.68□□□□□ -0.38
MCF2L-231ENST00000494043 ZNF286BP0CG31 522 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 RARBP10826 455 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 GUCY2CP25092 1073 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 MARK3P27448 753 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 NPEPPSP55786 919 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 GJA9P57773 515 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 NKX3-2P78367 333 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 MORC3Q14149 939 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 KCNB1Q14721 858 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 PLCB4Q15147 1175 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 STX1AQ16623 288 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 FSCN1Q16658 493 aaKnown RBP12.68□□□□□ -0.38
MCF2L-231ENST00000494043 UNC13DQ70J99 1090 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 DYMQ7RTS9 669 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 TRMT1LQ7Z2T5 733 aaKnown RBP12.68□□□□□ -0.38
MCF2L-231ENST00000494043 TRIML1Q8N9V2 468 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 ATP8B4Q8TF62 1192 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 CEP170P1Q96L14 293 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 REEP2Q9BRK0 252 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 C16orf70Q9BSU1 422 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 NIFKQ9BYG3 293 aaKnown RBP12.68□□□□□ -0.38
MCF2L-231ENST00000494043 NRBP2Q9NSY0 501 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 ERAP1Q9NZ08 941 aa12.68□□□□□ -0.38
MCF2L-231ENST00000494043 ZNF215Q9UL58 517 aaPredicted RBP12.68□□□□□ -0.38
MCF2L-231ENST00000494043 USO1O60763 962 aaKnown RBP12.67□□□□□ -0.38
MCF2L-231ENST00000494043 RHOBTB3O94955 611 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 NLRP12P59046 1061 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 BEX3Q00994 111 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 RAD51AP2Q09MP3 1159 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 GIT2Q14161 759 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 TARBP2Q15633 366 aaKnown RBP12.67□□□□□ -0.38
MCF2L-231ENST00000494043 MTERF2Q49AM1 385 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 KMT5BQ4FZB7 885 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 BBXQ8WY36 941 aaPredicted RBP12.67□□□□□ -0.38
MCF2L-231ENST00000494043 CCDC47Q96A33 483 aaKnown RBP12.67□□□□□ -0.38
MCF2L-231ENST00000494043 SH2D3AQ9BRG2 576 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 TIPINQ9BVW5 301 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 TSPY26PQ9H489 355 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 SPC25Q9HBM1 224 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 XPNPEP3Q9NQH7 507 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 CYP26B1Q9NR63 512 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 EXOC1Q9NV70 894 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 ANO10Q9NW15 660 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 DDX20Q9UHI6 824 aaKnown RBP12.67□□□□□ -0.38
MCF2L-231ENST00000494043 PPME1Q9Y570 386 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 ARID2Q68CP9 1835 aa12.67□□□□□ -0.38
MCF2L-231ENST00000494043 FRMD3A2A2Y4 597 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 MYADML2A6NDP7 307 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 H3BRB1 525 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 HBP1O60381 514 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 MSCO60682 206 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 ADAMTS4O75173 837 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 TBCAO75347 108 aaKnown RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 F2P00734 622 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 C6orf222P0C671 652 aaPredicted RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 HSPA1AP0DMV8 641 aaKnown RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 HSPA1BP0DMV9 641 aaKnown RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 IDEP14735 1019 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 BMP6P22004 513 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 CTCFP49711 727 aaPredicted RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 IRX5P78411 483 aaPredicted RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 CACNB1Q02641 598 aaPredicted RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 COASYQ13057 564 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 ISM2Q6H9L7 571 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 CTU1Q7Z7A3 348 aaKnown RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 CCDC65Q8IXS2 484 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 SH3TC2Q8TF17 1288 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 CEP89Q96ST8 783 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 TUT1Q9H6E5 874 aaKnown RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 HMX1Q9NP08 348 aaPredicted RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 PANK4Q9NVE7 773 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 ODF2LQ9ULJ1 636 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 TRPC6Q9Y210 931 aa12.66□□□□□ -0.38
MCF2L-231ENST00000494043 MYH9P35579 1960 aaKnown RBP12.66□□□□□ -0.38
MCF2L-231ENST00000494043 ZBTB42B2RXF5 422 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 KPNA6O60684 536 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 HIP1RO75146 1068 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 DGAT1O75907 488 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 PGK1P00558 417 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 MYL3P08590 195 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 CST5P28325 142 aaPredicted RBP12.65□□□□□ -0.38
MCF2L-231ENST00000494043 RFC5P40937 340 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 ZNF131P52739 623 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 EHHADHQ08426 723 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 MAPK7Q13164 816 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 DPCR1Q3MIW9 517 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 ANO6Q4KMQ2 910 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 ZNF658Q5TYW1 1059 aaPredicted RBP12.65□□□□□ -0.38
MCF2L-231ENST00000494043 MCPH1Q8NEM0 835 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 KAT2BQ92831 832 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 GTPBP4Q9BZE4 634 aaKnown RBP12.65□□□□□ -0.38
MCF2L-231ENST00000494043 RNPEPQ9H4A4 650 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 ATP6V0A4Q9HBG4 840 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 PDLIM7Q9NR12 457 aa12.65□□□□□ -0.38
MCF2L-231ENST00000494043 COL4A3BPQ9Y5P4 624 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms