RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ANGPTL2Q9UKU9 493 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 SPHKAPQ2M3C7 1700 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 CDC42BPAQ5VT25 1732 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 USP42Q9H9J4 1324 aaKnown RBP17.67■□□□□ 0.42
COL7A1-210ENST00000487017 ATXN8OSP0DMR3 200 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 ESRRAP11474 423 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-210ENST00000487017 SURF1Q15526 300 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 TXNRD1Q16881 649 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 PPP1R18Q6NYC8 613 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 APOL6Q9BWW8 343 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 PCDHA6Q9UN73 950 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 PCDHA8Q9Y5H6 950 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 QRICH2Q9H0J4 1663 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 NMT2O60551 498 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 TBC1D9BQ66K14 1250 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 OR6B2Q6IFH4 312 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 ZBTB33Q86T24 672 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 FOXP4Q8IVH2 680 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-210ENST00000487017 DNAAF3Q8N9W5 541 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 PITPNM3Q9BZ71 974 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 ADD3Q9UEY8 706 aaKnown RBP17.67■□□□□ 0.42
COL7A1-210ENST00000487017 PALLDQ8WX93 1383 aa17.67■□□□□ 0.42
COL7A1-210ENST00000487017 ZNF233A6NK53 670 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 E2F4Q16254 413 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 MUM1L1Q5H9M0 696 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 RAB44Q7Z6P3 723 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-210ENST00000487017 PDZD8Q8NEN9 1154 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 MADDQ8WXG6 1647 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 NCK2O43639 380 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 DCTN3O75935 186 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 GPC5P78333 572 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 EXOSC10Q01780 885 aaKnown RBP17.66■□□□□ 0.42
COL7A1-210ENST00000487017 ATG16L1Q676U5 607 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 PIGOQ8TEQ8 1089 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 GINM1Q9NU53 330 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 ANKRD65E5RJM6 399 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 E9PMD0 336 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 TJP3O95049 919 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 SNAP25P60880 206 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 IL1RL1Q01638 556 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 SNX25Q9H3E2 840 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 GOLGA8CPA6NN73 597 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 SPARCL1Q14515 664 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 STOX1Q6ZVD7 989 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 METTL16Q86W50 562 aaKnown RBP17.66■□□□□ 0.42
COL7A1-210ENST00000487017 N4BP2L2Q92802 583 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-210ENST00000487017 BAG5Q9UL15 447 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 MGEA5O60502 916 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 PEX3P56589 373 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 ATP2C1P98194 919 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-210ENST00000487017 TMEM179Q6ZVK1 233 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 SPDL1Q96EA4 605 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 SAYSD1Q9NPB0 183 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 DCP1AQ9NPI6 582 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-210ENST00000487017 TLK1Q9UKI8 766 aa17.66■□□□□ 0.42
COL7A1-210ENST00000487017 COA1Q9GZY4 146 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 CNOT8Q9UFF9 292 aaKnown RBP17.65■□□□□ 0.42
COL7A1-210ENST00000487017 ESYT2A0FGR8 921 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 PRDX5P30044 214 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 CASP2P42575 452 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 KCNJ6P48051 423 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 DEPDC1BQ8WUY9 529 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 ANAPC7Q9UJX3 599 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 BCS1LQ9Y276 419 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 TARSL2A2RTX5 802 aaKnown RBP17.65■□□□□ 0.42
COL7A1-210ENST00000487017 GSG1L2A8MUP6 293 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 WDR24Q96S15 920 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 ZCCHC17Q9NP64 241 aaKnown RBP17.65■□□□□ 0.42
COL7A1-210ENST00000487017 BARHL2Q9NY43 387 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 ZBTB24O43167 697 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-210ENST00000487017 MAGOHP61326 146 aaKnown RBP17.65■□□□□ 0.42
COL7A1-210ENST00000487017 HDLBPQ00341 1268 aaKnown RBP17.65■□□□□ 0.42
COL7A1-210ENST00000487017 SLFN12LQ6IEE8 588 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 NOP9Q86U38 636 aaKnown RBP17.65■□□□□ 0.42
COL7A1-210ENST00000487017 MAML1Q92585 1016 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 MSTO1Q9BUK6 570 aa17.65■□□□□ 0.42
COL7A1-210ENST00000487017 NOP53Q9NZM5 478 aaKnown RBP17.65■□□□□ 0.42
COL7A1-210ENST00000487017 TADA3O75528 432 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 ATP1A1P05023 1023 aaKnown RBP17.64■□□□□ 0.42
COL7A1-210ENST00000487017 KPNA2P52292 529 aaKnown RBP17.64■□□□□ 0.42
COL7A1-210ENST00000487017 PMS2P54278 862 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 PPP2R2AP63151 447 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 CCZ1BP86790 482 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 CCZ1P86791 482 aaPredicted RBP17.64■□□□□ 0.42
COL7A1-210ENST00000487017 PCGF5Q86SE9 256 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 ERICH1Q86X53 443 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 MCUQ8NE86 351 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 DPF2Q92785 391 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 RPS6KC1Q96S38 1066 aa17.64■□□□□ 0.42
COL7A1-210ENST00000487017 IQCB1Q15051 598 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.64■□□□□ 0.416e-7■■■■■ 29.2
COL7A1-210ENST00000487017 SRP68Q9UHB9 627 aaKnown RBP17.64■□□□□ 0.41
COL7A1-210ENST00000487017 FBXO2Q9UK22 296 aaPredicted RBP17.64■□□□□ 0.41
COL7A1-210ENST00000487017 CAPN11Q9UMQ6 739 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 CAV1Q03135 178 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 KNOP1Q1ED39 458 aaKnown RBP17.64■□□□□ 0.41
COL7A1-210ENST00000487017 GUF1Q8N442 669 aaKnown RBP17.64■□□□□ 0.41
COL7A1-210ENST00000487017 PPWD1Q96BP3 646 aaKnown RBP17.64■□□□□ 0.41
COL7A1-210ENST00000487017 CPVLQ9H3G5 476 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 GMNCA6NCL1 334 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms