RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 TKFCQ3LXA3 575 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 CEP85Q6P2H3 762 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 FAM133AQ8N9E0 248 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 ARNTL2Q8WYA1 636 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 SCLYQ96I15 445 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 FGD4Q96M96 766 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 ALDH8A1Q9H2A2 487 aaPredicted RBP7.91□□□□□ -1.14
HDAC3-209ENST00000486618 CERS4Q9HA82 394 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 HOMER2Q9NSB8 354 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 LMCD1Q9NZU5 365 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 CLIP2Q9UDT6 1046 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 SYNPO2Q9UMS6 1093 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 ASTN1O14525 1302 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 GRIN2DO15399 1336 aa7.91□□□□□ -1.14
HDAC3-209ENST00000486618 MYH7P12883 1935 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 LRRC37A2A6NM11 1700 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 TNKSO95271 1327 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 ZBED9Q6R2W3 1325 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 PI4K2BG5E9Z4 385 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 SMIM22K7EJ46 135 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 VDRP11473 427 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 PSMC6P62333 389 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 SBK1Q52WX2 424 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 BRDTQ58F21 947 aaPredicted RBP7.9□□□□□ -1.14
HDAC3-209ENST00000486618 LRRC69Q6ZNQ3 347 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 DEFB128Q7Z7B8 93 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 EGFL6Q8IUX8 553 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 RPAP2Q8IXW5 612 aaPredicted RBP7.9□□□□□ -1.14
HDAC3-209ENST00000486618 ZNF444Q8N0Y2 327 aaPredicted RBP7.9□□□□□ -1.14
HDAC3-209ENST00000486618 CHURC1Q8WUH1 139 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 FTOQ9C0B1 505 aaKnown RBP eCLIP7.9□□□□□ -1.14
HDAC3-209ENST00000486618 RSPH9Q9H1X1 276 aaPredicted RBP7.9□□□□□ -1.14
HDAC3-209ENST00000486618 BOLA2Q9H3K6 86 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 VTA1Q9NP79 307 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 A1CFQ9NQ94 594 aaKnown RBP7.9□□□□□ -1.14
HDAC3-209ENST00000486618 RNF146Q9NTX7 359 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 GEMIN8Q9NWZ8 242 aaKnown RBP7.9□□□□□ -1.14
HDAC3-209ENST00000486618 TCEAL9Q9UHQ7 104 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 ISY1Q9ULR0 285 aaKnown RBP7.9□□□□□ -1.14
HDAC3-209ENST00000486618 SCINQ9Y6U3 715 aa7.9□□□□□ -1.14
HDAC3-209ENST00000486618 SCN5AQ14524 2016 aa7.9□□□□□ -1.15
HDAC3-209ENST00000486618 GREB1LQ9C091 1923 aaPredicted RBP7.9□□□□□ -1.15
HDAC3-209ENST00000486618 BICDL2A1A5D9 508 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 MINDY4BA8MYZ0 360 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 PRR33A8MZF0 331 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 HMMRO75330 724 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 TTLL1O95922 423 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 EPXP11678 715 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 CYP2C9P11712 490 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 BMP3P12645 472 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 ATP5JP18859 108 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 ANP32AP39687 249 aaKnown RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 KCNJ6P48051 423 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 CPT1AP50416 773 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 STAT2P52630 851 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 TBX4P57082 545 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 TAP1Q03518 808 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 IKQ13123 557 aaPredicted RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 GRB10Q13322 594 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 PLEKHG6Q3KR16 790 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 CRTC2Q53ET0 693 aaPredicted RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 KIAA1211Q6ZU35 1233 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 ALYREFQ86V81 257 aaKnown RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 FAM160B2Q86V87 743 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 HERC6Q8IVU3 1022 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 GMCL1P1Q8NEA9 526 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 IRF2BPLQ9H1B7 796 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 CHD7Q9P2D1 2997 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 ADD3Q9UEY8 706 aaKnown RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 KLF15Q9UIH9 416 aa7.89□□□□□ -1.15
HDAC3-209ENST00000486618 G3BP2Q9UN86 482 aaKnown RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 RBM19Q9Y4C8 960 aaKnown RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 GPC6Q9Y625 555 aaPredicted RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 TRIP12Q14669 1992 aaPredicted RBP7.89□□□□□ -1.15
HDAC3-209ENST00000486618 TET1Q8NFU7 2136 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 IGKV6D-41A0A0C4DH26 115 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 FAM86C2PA6NEL3 165 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 EPOPA6NHQ4 379 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 TMEM232C9JQI7 657 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 PRC1O43663 620 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 KPNA6O60684 536 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 BAIAP3O94812 1187 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 MYL3P08590 195 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 ALAS1P13196 640 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 ALADP13716 330 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 HOXB4P17483 251 aaPredicted RBP7.88□□□□□ -1.15
HDAC3-209ENST00000486618 SEC13P55735 322 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 PTPN11Q06124 597 aaPredicted RBP7.88□□□□□ -1.15
HDAC3-209ENST00000486618 PTK7Q13308 1070 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 BFSP2Q13515 415 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 DUSP28Q4G0W2 176 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 FAM47CQ5HY64 1035 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 SLFN13Q68D06 897 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 KRT40Q6A162 431 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 TAPT1Q6NXT6 567 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 EEPD1Q7L9B9 569 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 STK11IPQ8N1F8 1099 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 C1orf131Q8NDD1 294 aaKnown RBP7.88□□□□□ -1.15
HDAC3-209ENST00000486618 STAG1Q8WVM7 1258 aa7.88□□□□□ -1.15
HDAC3-209ENST00000486618 VWCEQ96DN2 955 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms