RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ACRP10323 421 aa17.82■□□□□ 0.44
UPF3A-208ENST00000484246 FXR1P51114 621 aaKnown RBP eCLIP17.82■□□□□ 0.44
UPF3A-208ENST00000484246 ATP2C1P98194 919 aaPredicted RBP17.82■□□□□ 0.44
UPF3A-208ENST00000484246 FAM43BQ6ZT52 329 aaPredicted RBP17.82■□□□□ 0.44
UPF3A-208ENST00000484246 ANO5Q75V66 913 aa17.82■□□□□ 0.44
UPF3A-208ENST00000484246 ZNF710Q8N1W2 664 aa17.82■□□□□ 0.44
UPF3A-208ENST00000484246 DNAJB3Q8WWF6 145 aa17.82■□□□□ 0.44
UPF3A-208ENST00000484246 EIF2AK1Q9BQI3 630 aaKnown RBP17.82■□□□□ 0.44
UPF3A-208ENST00000484246 WRAP73Q9P2S5 460 aaPredicted RBP17.82■□□□□ 0.44
UPF3A-208ENST00000484246 SQORQ9Y6N5 450 aa17.82■□□□□ 0.44
UPF3A-208ENST00000484246 IGKV6-21A0A0C4DH24 114 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 POTEMA6NI47 508 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 SLITRK3O94933 977 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 BMP15O95972 392 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 FGBP02675 491 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 CHRNA1P02708 482 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 ACTN1P12814 892 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 MRPS6P82932 125 aaKnown RBP17.81■□□□□ 0.44
UPF3A-208ENST00000484246 RESTQ13127 1097 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 PTGDRQ13258 359 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 CNKSR3Q6P9H4 555 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 KIAA0319LQ8IZA0 1049 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 IGSF22Q8N9C0 903 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 ZBTB10Q96DT7 871 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 DYDC2Q96IM9 177 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 RGL1Q9NZL6 768 aa17.81■□□□□ 0.44
UPF3A-208ENST00000484246 SEPT9Q9UHD8 586 aaPredicted RBP17.81■□□□□ 0.44
UPF3A-208ENST00000484246 STX6O43752 255 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 EFCAB14O75071 495 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 CTSHP09668 335 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 MUTP22033 750 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 PDIA5Q14554 519 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 TMEM266Q2M3C6 531 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 PLEKHG4Q58EX7 1191 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 IER5Q5VY09 327 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 ARL6IP4Q66PJ3 421 aaKnown RBP17.8■□□□□ 0.44
UPF3A-208ENST00000484246 GPR153Q6NV75 609 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 DEFB128Q7Z7B8 93 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 USP38Q8NB14 1042 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 POLR3CQ9BUI4 534 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-208ENST00000484246 FAM49AQ9H0Q0 323 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-208ENST00000484246 TUFT1Q9NNX1 390 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 TRPV2Q9Y5S1 764 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 STK24Q9Y6E0 443 aa17.8■□□□□ 0.44
UPF3A-208ENST00000484246 MORC2Q9Y6X9 1032 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-208ENST00000484246 TRIOBPQ9H2D6 2365 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 YWHABP31946 246 aaKnown RBP17.79■□□□□ 0.44
UPF3A-208ENST00000484246 TECP42680 631 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 SMAD3P84022 425 aaKnown RBP17.79■□□□□ 0.44
UPF3A-208ENST00000484246 CYP4A11Q02928 519 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 TBC1D8BQ0IIM8 1120 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 HAUS3Q68CZ6 603 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 ERMNQ8TAM6 284 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 JPH2Q9BR39 696 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-208ENST00000484246 RAB34Q9BZG1 259 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 ZSCAN16Q9H4T2 348 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-208ENST00000484246 CYP26B1Q9NR63 512 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 ANKEF1Q9NU02 776 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 CDY2AQ9Y6F7 541 aa17.79■□□□□ 0.44
UPF3A-208ENST00000484246 ABHD14A-ACY1A0A1B0GW23 586 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 M0QZ92 97 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 MAFO75444 373 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-208ENST00000484246 SPATA31C1P0DKV0 1188 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 XRCC6P12956 609 aaKnown RBP eCLIP17.78■□□□□ 0.44
UPF3A-208ENST00000484246 RPA1P27694 616 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 TMOD1P28289 359 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 CTTNQ14247 550 aaKnown RBP17.78■□□□□ 0.44
UPF3A-208ENST00000484246 FBXO47Q5MNV8 452 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 OTUD6AQ7L8S5 288 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 OTOP2Q7RTS6 562 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 FERMT3Q86UX7 667 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 EXOC8Q8IYI6 725 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 APBB2Q92870 758 aa17.78■□□□□ 0.44
UPF3A-208ENST00000484246 CELF4Q9BZC1 486 aaKnown RBP17.78■□□□□ 0.44
UPF3A-208ENST00000484246 DHX33Q9H6R0 707 aaKnown RBP17.78■□□□□ 0.44
UPF3A-208ENST00000484246 CXXC1Q9P0U4 656 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-208ENST00000484246 TMEM150BA6NC51 233 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 DDX11L8A8MPP1 907 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 SOX1O00570 391 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-208ENST00000484246 GAS2O43903 313 aaKnown RBP17.77■□□□□ 0.44
UPF3A-208ENST00000484246 HSP90AA1P07900 732 aaKnown RBP17.77■□□□□ 0.44
UPF3A-208ENST00000484246 RFC5P40937 340 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 CLCN3P51790 818 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 LPIN1Q14693 890 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 MTERF2Q49AM1 385 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 PLA2G4FQ68DD2 849 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 EFCAB12Q6NXP0 572 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 DTHD1Q6ZMT9 781 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 TSHZ1Q6ZSZ6 1077 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 PHOSPHO2Q8TCD6 241 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 SEPT8Q92599 483 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 MAP7D2Q96T17 732 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 SLC9A7Q96T83 725 aa17.77■□□□□ 0.44
UPF3A-208ENST00000484246 FTOQ9C0B1 505 aaKnown RBP eCLIP17.77■□□□□ 0.44
UPF3A-208ENST00000484246 MED24O75448 989 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 IL17AQ16552 155 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 TCTN1Q2MV58 587 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 TRMT1LQ7Z2T5 733 aaKnown RBP17.76■□□□□ 0.43
UPF3A-208ENST00000484246 CATSPER3Q86XQ3 398 aa17.76■□□□□ 0.43
UPF3A-208ENST00000484246 TPH2Q8IWU9 490 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms