RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 BRINP2Q9C0B6 783 aa6.89□□□□□ -1.31
PTCD3-211ENST00000476215 TOMM22Q9NS69 142 aa6.89□□□□□ -1.31
PTCD3-211ENST00000476215 ARHGAP28Q9P2N2 729 aa6.89□□□□□ -1.31
PTCD3-211ENST00000476215 APOBEC2Q9Y235 224 aaKnown RBP6.89□□□□□ -1.31
PTCD3-211ENST00000476215 SPO11Q9Y5K1 396 aa6.89□□□□□ -1.31
PTCD3-211ENST00000476215 RASSF10A6NK89 507 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 CYP17A1P05093 508 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 PTX3P26022 381 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-211ENST00000476215 SDHAP31040 664 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 HERVK_113P62684 666 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 EFEMP1Q12805 493 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 RTP5Q14D33 572 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 CATSPEREQ5SY80 951 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 ERICH6BQ5W0A0 696 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 STK32CQ86UX6 486 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 HIPK4Q8NE63 616 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 WDR66Q8TBY9 1149 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 ASB15Q8WXK1 588 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 ERCC4Q92889 916 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-211ENST00000476215 GBP4Q96PP9 640 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 EMC7Q9NPA0 242 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 USP40Q9NVE5 1235 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 DUSP10Q9Y6W6 482 aa6.88□□□□□ -1.31
PTCD3-211ENST00000476215 CELA3BP08861 270 aa6.87□□□□□ -1.31
PTCD3-211ENST00000476215 ENO2P09104 434 aaPredicted RBP6.87□□□□□ -1.31
PTCD3-211ENST00000476215 ANAPC15P60006 121 aa6.87□□□□□ -1.31
PTCD3-211ENST00000476215 IGBP1P78318 339 aa6.87□□□□□ -1.31
PTCD3-211ENST00000476215 TMPRSS15P98073 1019 aa6.87□□□□□ -1.31
PTCD3-211ENST00000476215 PFKPQ01813 784 aa6.87□□□□□ -1.31
PTCD3-211ENST00000476215 LHFPL2Q6ZUX7 228 aa6.87□□□□□ -1.31
PTCD3-211ENST00000476215 SCYL1Q96KG9 808 aa6.87□□□□□ -1.31
PTCD3-211ENST00000476215 YTHDC1Q96MU7 727 aaKnown RBP6.87□□□□□ -1.31
PTCD3-211ENST00000476215 SLC39A2Q9NP94 309 aa6.87□□□□□ -1.31
PTCD3-211ENST00000476215 ZNF839A8K0R7 811 aa6.86□□□□□ -1.31
PTCD3-211ENST00000476215 TGM5O43548 720 aa6.86□□□□□ -1.31
PTCD3-211ENST00000476215 CDK11BP21127 795 aaKnown RBP6.86□□□□□ -1.31
PTCD3-211ENST00000476215 AOAHP28039 575 aa6.86□□□□□ -1.31
PTCD3-211ENST00000476215 CDKN1CP49918 316 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-211ENST00000476215 KRTAP10-2P60368 255 aa6.86□□□□□ -1.31
PTCD3-211ENST00000476215 DDB1Q16531 1140 aa6.86□□□□□ -1.31
PTCD3-211ENST00000476215 DTX3Q8N9I9 347 aa6.86□□□□□ -1.31
PTCD3-211ENST00000476215 MBD6Q96DN6 1003 aa6.86□□□□□ -1.31
PTCD3-211ENST00000476215 RBM15Q96T37 977 aaKnown RBP eCLIP6.86□□□□□ -1.31
PTCD3-211ENST00000476215 PRAMEF22A3QJZ6 481 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 GPR39O43194 453 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 CYP7B1O75881 506 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 CHGBP05060 677 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 COL6A1P12109 1028 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 PTGS1P23219 599 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 MC4RP32245 332 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 FNTBP49356 437 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 EVA1CP58658 441 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 RGL3Q3MIN7 710 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 PRAMEF18Q5VWM3 479 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 RNF219Q5W0B1 726 aaPredicted RBP6.85□□□□□ -1.31
PTCD3-211ENST00000476215 HDGFL2Q7Z4V5 671 aaPredicted RBP6.85□□□□□ -1.31
PTCD3-211ENST00000476215 PRPF38AQ8NAV1 312 aaKnown RBP6.85□□□□□ -1.31
PTCD3-211ENST00000476215 TXNDC5Q8NBS9 432 aaKnown RBP6.85□□□□□ -1.31
PTCD3-211ENST00000476215 IGDCC4Q8TDY8 1250 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 ZCCHC14Q8WYQ9 949 aaKnown RBP6.85□□□□□ -1.31
PTCD3-211ENST00000476215 SLC5A5Q92911 643 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 ZSWIM3Q96MP5 696 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 CLIC6Q96NY7 704 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 DLL4Q9NR61 685 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 UCKL1Q9NWZ5 548 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 BTBD7Q9P203 1132 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 ASB1Q9Y576 335 aa6.85□□□□□ -1.31
PTCD3-211ENST00000476215 MROH6A6NGR9 719 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 CNR2P34972 360 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 SMAD3P84022 425 aaKnown RBP6.84□□□□□ -1.31
PTCD3-211ENST00000476215 KIAA2012Q0VF49 1180 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 SMAD2Q15796 467 aaKnown RBP6.84□□□□□ -1.31
PTCD3-211ENST00000476215 SKIDA1Q1XH10 827 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 UBXN11Q5T124 520 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 PHF19Q5T6S3 580 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 BROXQ5VW32 411 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 IQSEC1Q6DN90 963 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 ESRP1Q6NXG1 681 aaKnown RBP6.84□□□□□ -1.31
PTCD3-211ENST00000476215 SPATS2Q86XZ4 545 aaKnown RBP6.84□□□□□ -1.31
PTCD3-211ENST00000476215 ZZZ3Q8IYH5 903 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 C16orf92Q96LL3 132 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 KRTAP4-2Q9BYR5 136 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 ARHGAP20Q9P2F6 1191 aa6.84□□□□□ -1.31
PTCD3-211ENST00000476215 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.83□□□□□ -1.32
PTCD3-211ENST00000476215 GOLGA6L22H0YM25 854 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 DDX3XO00571 662 aaKnown RBP eCLIP6.83□□□□□ -1.32
PTCD3-211ENST00000476215 RAB11FIP3O75154 756 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 ULK1O75385 1050 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 ITGB3P05106 788 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 CD40P25942 277 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 LSP1P33241 339 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 GLRBP48167 497 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 MLLT6P55198 1093 aaPredicted RBP6.83□□□□□ -1.32
PTCD3-211ENST00000476215 FAM50AQ14320 339 aaKnown RBP6.83□□□□□ -1.32
PTCD3-211ENST00000476215 EPHA7Q15375 998 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 TERF2Q15554 542 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 NME9Q86XW9 330 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 LGI4Q8N135 537 aa6.83□□□□□ -1.32
PTCD3-211ENST00000476215 RTF1Q92541 710 aaKnown RBP6.83□□□□□ -1.32
PTCD3-211ENST00000476215 LCORQ96JN0 433 aaPredicted RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms